Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GP469_RS12330 Genome accession   NZ_CP046808
Coordinates   2478078..2478677 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2473078..2483677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS25895 - 2474230..2474361 (+) 132 WP_005380608.1 hypothetical protein -
  GP469_RS12310 - 2474377..2474781 (+) 405 WP_005494429.1 YbaN family protein -
  GP469_RS12315 apt 2474947..2475492 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GP469_RS12320 dnaX 2475501..2477636 (+) 2136 WP_005494431.1 DNA polymerase III subunit gamma/tau -
  GP469_RS12325 - 2477719..2478048 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GP469_RS12330 recR 2478078..2478677 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GP469_RS12335 aqpZ 2478728..2479426 (-) 699 WP_005460095.1 aquaporin Z -
  GP469_RS12340 - 2479633..2480892 (-) 1260 WP_005494432.1 amino acid permease -
  GP469_RS12345 - 2481210..2481590 (+) 381 WP_005494433.1 RidA family protein -
  GP469_RS12350 - 2481606..2482883 (+) 1278 WP_005494434.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GP469_RS12355 - 2482912..2483571 (+) 660 WP_005397228.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355928 GP469_RS12330 WP_005460088.1 2478078..2478677(+) (recR) [Vibrio parahaemolyticus strain 2013V-1146]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355928 GP469_RS12330 WP_005460088.1 2478078..2478677(+) (recR) [Vibrio parahaemolyticus strain 2013V-1146]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432