Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SAAV_RS07885 Genome accession   NC_013450
Coordinates   1592656..1593102 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED98     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587656..1598102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAAV_RS07855 (SAAV_1528) gcvPA 1588582..1589928 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAAV_RS07860 (SAAV_1529) gcvT 1589948..1591039 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAAV_RS07865 (SAAV_1531) - 1591198..1591722 (-) 525 WP_001015120.1 shikimate kinase -
  SAAV_RS07870 - 1591712..1591858 (-) 147 WP_001792109.1 hypothetical protein -
  SAAV_RS07875 (SAAV_1532) comGF 1591955..1592452 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAAV_RS07880 comGE 1592370..1592669 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  SAAV_RS07885 (SAAV_1533) comGD 1592656..1593102 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAAV_RS07890 (SAAV_1534) comGC 1593080..1593391 (-) 312 WP_000472253.1 competence type IV pilus major pilin ComGC Machinery gene
  SAAV_RS07895 (SAAV_1535) comGB 1593405..1594475 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAAV_RS07900 (SAAV_1536) comGA 1594447..1595421 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAAV_RS07905 (SAAV_1537) - 1595473..1596096 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAAV_RS07910 (SAAV_1538) - 1596093..1596422 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAAV_RS07915 (SAAV_1539) - 1596422..1597408 (-) 987 WP_000161314.1 ROK family glucokinase -
  SAAV_RS07920 (SAAV_1540) - 1597405..1597608 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=35591 SAAV_RS07885 WP_001788899.1 1592656..1593102(-) (comGD) [Staphylococcus aureus subsp. aureus ED98]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=35591 SAAV_RS07885 WP_001788899.1 1592656..1593102(-) (comGD) [Staphylococcus aureus subsp. aureus ED98]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment