Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EGO56_RS16270 Genome accession   NZ_CP038853
Coordinates   3447794..3449176 (-) Length   460 a.a.
NCBI ID   WP_003854897.1    Uniprot ID   A0A1I5CYX4
Organism   Pantoea vagans strain LMG 24199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3442794..3454176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGO56_RS16255 (EGO56_16255) - 3444333..3445229 (-) 897 WP_135910184.1 LysR family transcriptional regulator -
  EGO56_RS16260 (EGO56_16260) - 3445434..3446435 (+) 1002 WP_013356689.1 zinc-binding alcohol dehydrogenase family protein -
  EGO56_RS16265 (EGO56_16265) nadR 3446481..3447722 (-) 1242 WP_135910186.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  EGO56_RS16270 (EGO56_16270) radA 3447794..3449176 (-) 1383 WP_003854897.1 DNA repair protein RadA Machinery gene
  EGO56_RS16275 (EGO56_16275) serB 3449190..3450167 (-) 978 WP_095706237.1 phosphoserine phosphatase -
  EGO56_RS16280 (EGO56_16280) - 3450275..3450925 (+) 651 WP_135910188.1 YtjB family periplasmic protein -
  EGO56_RS16285 (EGO56_16285) yjjG 3451331..3452011 (-) 681 WP_135910190.1 pyrimidine 5'-nucleotidase -
  EGO56_RS16290 (EGO56_16290) rimI 3452030..3452470 (-) 441 WP_013356684.1 ribosomal protein S18-alanine N-acetyltransferase -
  EGO56_RS16295 (EGO56_16295) - 3452442..3452852 (-) 411 WP_135910192.1 DNA polymerase III subunit psi -
  EGO56_RS16300 (EGO56_16300) rsmC 3452959..3453990 (+) 1032 WP_033731428.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49323.93 Da        Isoelectric Point: 7.4220

>NTDB_id=355900 EGO56_RS16270 WP_003854897.1 3447794..3449176(-) (radA) [Pantoea vagans strain LMG 24199]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=355900 EGO56_RS16270 WP_003854897.1 3447794..3449176(-) (radA) [Pantoea vagans strain LMG 24199]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAATGAATGCGGCGCAGATTACCCACGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATCGCCGCCTCGCCCGCCGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGTAGTGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTTAAAGAGTTTGACCGGGTGCTGGGCGGCGGCGTCGTGCCGGGCAGTGCTATTCTGATTGGCGGCAGTCCGGGCGCGGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAAGGGATGAAAACCCTGTACGTCACCGGTGAAGAGTCAC
TGCAACAGGTGGCAATGCGTGCCCATCGTCTGGGATTACCCACCGAAAATGTAAATATGCTGTCTGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCGGGCAGCGTGGCTCAGGTACGGGAAACCGCCGCTTACCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGCTCGCTGGCCGGGCCGAAGGTGCTGGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGTGTATTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAATCCATCCGCTATCTTCCTGTCGCGTGGCGAAGAGG
TCACCTCGGGCAGTTCGGTCATGGTGCTGTGGGAGGGAACGCGTCCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAT
TCGATGATGGGCAATCCGCGCCGCGTGGCGGTGGGTCTGGAACAGAACCGTCTGGCGATTCTGCTCGCCGTTTTACACCG
CCACGGCGGATTGCAGATGGCGGACCAGGATGTGTTCGTGAACGTGGTTGGTGGCGTTAAGGTCACCGAAACCAGTGCGG
ATCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGCCCATTGCCGCAGGATCTGGTGATCTTCGGCGAAGTA
GGACTGGCCGGTGAGATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCTCTGAAGCAGCGAAGCATGGCTTCAAACGCGC
CATTGTACCGGCGGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5CYX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment