Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY29_RS13710 Genome accession   NZ_CP046787
Coordinates   2719852..2720451 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2714852..2725451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS13685 - 2714958..2715617 (-) 660 WP_005397228.1 PAS domain-containing protein -
  GPY29_RS13690 - 2715646..2716923 (-) 1278 WP_025499567.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY29_RS13695 - 2716939..2717319 (-) 381 WP_005479566.1 RidA family protein -
  GPY29_RS13700 - 2717637..2718896 (+) 1260 WP_005494432.1 amino acid permease -
  GPY29_RS13705 aqpZ 2719103..2719801 (+) 699 WP_005460095.1 aquaporin Z -
  GPY29_RS13710 recR 2719852..2720451 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GPY29_RS13715 - 2720481..2720810 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY29_RS13720 dnaX 2720893..2723028 (-) 2136 WP_029837545.1 DNA polymerase III subunit gamma/tau -
  GPY29_RS13725 apt 2723037..2723582 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY29_RS13730 - 2723748..2724152 (-) 405 WP_005494429.1 YbaN family protein -
  GPY29_RS25770 - 2724168..2724299 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355826 GPY29_RS13710 WP_005460088.1 2719852..2720451(-) (recR) [Vibrio parahaemolyticus strain 2013V-1174]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355826 GPY29_RS13710 WP_005460088.1 2719852..2720451(-) (recR) [Vibrio parahaemolyticus strain 2013V-1174]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432