Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SaO82_RS08060 Genome accession   NZ_CP038819
Coordinates   1635399..1636085 (-) Length   228 a.a.
NCBI ID   WP_078064899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O82     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630399..1641085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO82_RS08040 (SaO82_1508) rpsT 1631313..1631564 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SaO82_RS08045 (SaO82_1509) holA 1631609..1632583 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SaO82_RS08050 (SaO82_1510) comEC 1632640..1634841 (-) 2202 WP_025174647.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SaO82_RS08055 (SaO82_1511) - 1634846..1635307 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SaO82_RS08060 (SaO82_1512) comEA 1635399..1636085 (-) 687 WP_078064899.1 ComEA family DNA-binding protein Machinery gene
  SaO82_RS08065 (SaO82_1513) - 1636125..1636841 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  SaO82_RS08070 (SaO82_1514) rsfS 1636844..1637197 (-) 354 WP_001088020.1 ribosome silencing factor -
  SaO82_RS08075 (SaO82_1515) yqeK 1637198..1637782 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SaO82_RS08080 (SaO82_1516) nadD 1637772..1638341 (-) 570 WP_000725161.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SaO82_RS08085 (SaO82_1517) yhbY 1638344..1638634 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SaO82_RS08090 (SaO82_1518) aroE 1638638..1639444 (-) 807 WP_000666751.1 shikimate dehydrogenase -
  SaO82_RS08095 (SaO82_1519) yqeH 1639458..1640558 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.67 Da        Isoelectric Point: 9.7956

>NTDB_id=355812 SaO82_RS08060 WP_078064899.1 1635399..1636085(-) (comEA) [Staphylococcus aureus strain O82]
MVLLYQFLLRYKDFLTQWKLYIISVVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSEISSLSKLEDVQVKDRDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVDPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=355812 SaO82_RS08060 WP_078064899.1 1635399..1636085(-) (comEA) [Staphylococcus aureus strain O82]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGTTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATAGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGACCCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment