Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GPY29_RS01380 Genome accession   NZ_CP046787
Coordinates   261667..263502 (-) Length   611 a.a.
NCBI ID   WP_005497387.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 256667..268502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS01350 trxA 256927..257253 (-) 327 WP_005458583.1 thioredoxin TrxA -
  GPY29_RS01355 rhlB 257366..258679 (+) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  GPY29_RS01360 gppA 258699..260192 (+) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  GPY29_RS01365 - 260390..261058 (-) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  GPY29_RS01375 - 261352..261657 (-) 306 WP_005458579.1 DUF3630 family protein -
  GPY29_RS01380 recQ 261667..263502 (-) 1836 WP_005497387.1 ATP-dependent DNA helicase RecQ Machinery gene
  GPY29_RS01385 rarD 263677..264591 (+) 915 WP_029838895.1 EamA family transporter RarD -
  GPY29_RS01390 - 264666..265463 (+) 798 WP_005458575.1 AraC family transcriptional regulator -
  GPY29_RS01395 - 265555..266214 (+) 660 WP_005458574.1 LysE family translocator -
  GPY29_RS01400 ggt 266325..268085 (+) 1761 WP_029838898.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69213.10 Da        Isoelectric Point: 6.8897

>NTDB_id=355771 GPY29_RS01380 WP_005497387.1 261667..263502(-) (recQ) [Vibrio parahaemolyticus strain 2013V-1174]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=355771 GPY29_RS01380 WP_005497387.1 261667..263502(-) (recQ) [Vibrio parahaemolyticus strain 2013V-1174]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTTGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGCTGGTTCGTAGTGGCATCACCTTAGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTGATGCGTGACT
TCATCGAGCGACTCGAAAATCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTTGTCGAGAAGCACAAGCCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCTAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGTGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGGCTGCTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(31-189)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393