Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY29_RS01100 Genome accession   NZ_CP046787
Coordinates   212067..213296 (-) Length   409 a.a.
NCBI ID   WP_023667297.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207067..218296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS01070 - 207252..207662 (+) 411 WP_015297469.1 flagellar basal body-associated protein FliL -
  GPY29_RS01075 glpG 207722..208564 (-) 843 WP_031830061.1 rhomboid family intramembrane serine protease GlpG -
  GPY29_RS01080 glpE 208564..208884 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY29_RS01085 rpoH 209376..210236 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY29_RS01090 ftsX 210412..211380 (-) 969 WP_031781736.1 permease-like cell division protein FtsX -
  GPY29_RS01095 ftsE 211370..212044 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY29_RS01100 pilA 212067..213296 (-) 1230 WP_023667297.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY29_RS01105 rsmD 213520..214119 (+) 600 WP_029803264.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY29_RS01110 - 214145..214411 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY29_RS01115 - 214465..215049 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  GPY29_RS01120 - 215169..215390 (-) 222 WP_025795794.1 YecH family metal-binding protein -
  GPY29_RS01125 - 215460..216080 (-) 621 WP_005481960.1 lysoplasmalogenase -
  GPY29_RS01135 - 216815..216994 (+) 180 WP_005458791.1 hypothetical protein -
  GPY29_RS01140 - 217057..217425 (-) 369 WP_005489749.1 hypothetical protein -
  GPY29_RS01145 - 217667..217996 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44538.15 Da        Isoelectric Point: 4.2803

>NTDB_id=355769 GPY29_RS01100 WP_023667297.1 212067..213296(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1174]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVKEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKII
NNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAA
GDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKID
DSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEF
IDALFSREE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=355769 GPY29_RS01100 WP_023667297.1 212067..213296(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1174]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAAAAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAGA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTT
CGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAA
TCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATC
AACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGC
GGAGATTCTATCTAAAGTAGAACAGCCTCTAGATATCGACAGTAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGA
ATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCAGCT
GGCGATACTTTCCGAGCGGCCGCGGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCA
TACTGGCGCAGATAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCG
ATACGGCGGGTCGTCTACAAAATAAAGCCAACCTAATGGAAGAGCTCCGTAAGATTGTACGTGTGATGAAGAAAATTGAT
GATTCTGCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAG
TGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTG
ATCAGTTTGGTATTCCAATTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTT
ATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(125-186)

SRP54-type protein, GTPase domain (SRP54)

(206-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.958

93.888

0.46