Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY45_RS15310 Genome accession   NZ_CP046785
Coordinates   3014824..3015804 (+) Length   326 a.a.
NCBI ID   WP_089202544.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009824..3020804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS15290 - 3010181..3011791 (+) 1611 WP_089202546.1 peptide ABC transporter substrate-binding protein -
  GPY45_RS15295 oppB 3011958..3012878 (+) 921 WP_089202545.1 oligopeptide ABC transporter permease OppB -
  GPY45_RS15300 - 3012888..3013820 (+) 933 WP_017448602.1 ABC transporter permease subunit -
  GPY45_RS15305 - 3013831..3014814 (+) 984 WP_025633654.1 ABC transporter ATP-binding protein -
  GPY45_RS15310 amiE 3014824..3015804 (+) 981 WP_089202544.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY45_RS15315 - 3015814..3017610 (+) 1797 WP_089202543.1 aminopeptidase P family protein -
  GPY45_RS15325 - 3017863..3020307 (-) 2445 WP_089202542.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36439.28 Da        Isoelectric Point: 8.6753

>NTDB_id=355754 GPY45_RS15310 WP_089202544.1 3014824..3015804(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1136]
MNQKEVLFSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVKKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355754 GPY45_RS15310 WP_089202544.1 3014824..3015804(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1136]
ATGAATCAGAAAGAAGTGTTATTTTCCGCTCGCGACCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCAAAAAACGCGTCATTGCAATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCTGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiF Streptococcus thermophilus LMG 18311

45.788

83.742

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMD-9

45.421

83.742

0.38
  oppD Streptococcus mutans UA159

38.019

96.012

0.365

Multiple sequence alignment