Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KAN01_RS16510 Genome accession   NZ_CP038816
Coordinates   3384610..3386838 (+) Length   742 a.a.
NCBI ID   WP_135925481.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3379610..3391838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS16480 (KAN01_16480) lnt 3379646..3381205 (+) 1560 WP_002156963.1 apolipoprotein N-acyltransferase -
  KAN01_RS16485 (KAN01_16485) - 3381207..3381545 (-) 339 WP_002156976.1 tRNA-binding protein -
  KAN01_RS16490 (KAN01_16490) - 3381786..3382046 (+) 261 WP_135925480.1 DUF2798 domain-containing protein -
  KAN01_RS16495 (KAN01_16495) - 3382107..3382451 (-) 345 WP_114270711.1 hypothetical protein -
  KAN01_RS16500 (KAN01_16500) gspG 3382717..3383232 (-) 516 WP_017393987.1 type II secretion system major pseudopilin GspG -
  KAN01_RS16505 (KAN01_16505) gspF 3383256..3384461 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  KAN01_RS16510 (KAN01_16510) priA 3384610..3386838 (+) 2229 WP_135925481.1 primosomal protein N' Machinery gene
  KAN01_RS16515 (KAN01_16515) - 3386914..3388755 (+) 1842 WP_004710778.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KAN01_RS16520 (KAN01_16520) - 3388921..3389796 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  KAN01_RS16525 (KAN01_16525) - 3389933..3390544 (+) 612 WP_002157001.1 LysE family translocator -
  KAN01_RS16530 (KAN01_16530) - 3390694..3391653 (+) 960 WP_032009927.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83930.79 Da        Isoelectric Point: 8.5653

>NTDB_id=355749 KAN01_RS16510 WP_135925481.1 3384610..3386838(+) (priA) [Acinetobacter nosocomialis strain KAN01]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKVQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=355749 KAN01_RS16510 WP_135925481.1 3384610..3386838(+) (priA) [Acinetobacter nosocomialis strain KAN01]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGTACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTGTTATTTCATTTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTAAATGATGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCTTTTTTATTAGATGGCTTAACCGGAAGTGGTAAA
ACCGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCTGAAATTGGGTT
AACCCCTCAAACCATTTCACGCTTTAAATCTCGTTTTAACTGTGACATTGCTTTATTACATTCGGGCTTAAATGATTCGA
AGCGCTTACAAGCATGGCAACAGGCACAGACTGGAAAAGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAGCACGATCTGTCTTATAAACAACAAGAAGGCTTTCGTTACCATGC
CCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCACTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCTTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGCCACCACTGCGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTTGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCACCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTAACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAACGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGCGATTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGGCCAATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTATTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCCGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98

Multiple sequence alignment