Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | KAN01_RS09990 | Genome accession | NZ_CP038816 |
| Coordinates | 2087953..2088333 (-) | Length | 126 a.a. |
| NCBI ID | WP_004887479.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain KAN01 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2082953..2093333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAN01_RS09965 (KAN01_09965) | - | 2083414..2084538 (-) | 1125 | WP_006580787.1 | enoyl-CoA hydratase/isomerase family protein | - |
| KAN01_RS09970 (KAN01_09970) | ung | 2084535..2085248 (-) | 714 | WP_032011224.1 | uracil-DNA glycosylase | - |
| KAN01_RS09975 (KAN01_09975) | - | 2085299..2085895 (-) | 597 | WP_032011226.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| KAN01_RS09980 (KAN01_09980) | gspK | 2086125..2087084 (-) | 960 | WP_135924997.1 | type II secretion system minor pseudopilin GspK | - |
| KAN01_RS09985 (KAN01_09985) | xcpW | 2087084..2087953 (-) | 870 | WP_032011228.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| KAN01_RS09990 (KAN01_09990) | xcpV | 2087953..2088333 (-) | 381 | WP_004887479.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| KAN01_RS09995 (KAN01_09995) | - | 2088323..2088874 (-) | 552 | WP_002049902.1 | type II secretion system protein | - |
| KAN01_RS10000 (KAN01_10000) | - | 2088884..2089492 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| KAN01_RS10005 (KAN01_10005) | - | 2089530..2090303 (-) | 774 | WP_004709116.1 | TatD family hydrolase | - |
| KAN01_RS10010 (KAN01_10010) | - | 2090321..2090662 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| KAN01_RS10015 (KAN01_10015) | - | 2090675..2091655 (-) | 981 | WP_032011231.1 | DNA polymerase III subunit delta' | - |
| KAN01_RS10020 (KAN01_10020) | kdsB | 2091667..2092428 (-) | 762 | WP_004709120.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14024.27 Da Isoelectric Point: 9.7155
>NTDB_id=355737 KAN01_RS09990 WP_004887479.1 2087953..2088333(-) (xcpV) [Acinetobacter nosocomialis strain KAN01]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=355737 KAN01_RS09990 WP_004887479.1 2087953..2088333(-) (xcpV) [Acinetobacter nosocomialis strain KAN01]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
95.238 |
100 |
0.952 |