Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY45_RS05730 Genome accession   NZ_CP046785
Coordinates   1122494..1123693 (+) Length   399 a.a.
NCBI ID   WP_089203560.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117494..1128693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS05685 - 1117794..1118123 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  GPY45_RS05690 - 1118365..1118733 (+) 369 WP_005489749.1 hypothetical protein -
  GPY45_RS05695 - 1118796..1118975 (-) 180 WP_005458791.1 hypothetical protein -
  GPY45_RS05705 - 1119710..1120330 (+) 621 WP_005481960.1 lysoplasmalogenase -
  GPY45_RS05710 - 1120400..1120621 (+) 222 WP_025624550.1 YecH family metal-binding protein -
  GPY45_RS05715 - 1120741..1121325 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  GPY45_RS05720 - 1121379..1121645 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY45_RS05725 rsmD 1121671..1122270 (-) 600 WP_089203561.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY45_RS05730 pilA 1122494..1123693 (+) 1200 WP_089203560.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY45_RS05735 ftsE 1123716..1124390 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY45_RS05740 ftsX 1124380..1125348 (+) 969 WP_031781736.1 permease-like cell division protein FtsX -
  GPY45_RS05745 rpoH 1125524..1126384 (+) 861 WP_020839826.1 RNA polymerase sigma factor RpoH -
  GPY45_RS05750 glpE 1126876..1127196 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY45_RS05755 glpG 1127196..1128038 (+) 843 WP_089203559.1 rhomboid family intramembrane serine protease GlpG -
  GPY45_RS05760 - 1128098..1128508 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 43510.11 Da        Isoelectric Point: 4.3344

>NTDB_id=355710 GPY45_RS05730 WP_089203560.1 1122494..1123693(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1136]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEEPQV
PVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKASRG
DLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVE
QLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLT
LDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=355710 GPY45_RS05730 WP_089203560.1 1122494..1123693(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1136]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAGCCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCACAAGTA
CCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTAC
GAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAG
AGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGAGGT
GATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCT
AGATATCGACAGTAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTA
AACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCAGCTGGCGATACTTTCCGAGCGGCCGCGGTTGAG
CAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGATAGCGCATCGGTTATCTA
CGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCA
ACCTAATGGAAGAGCTCCGTAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACG
CTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATT
GACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTGGTATTCCAATTCGCTACATTG
GTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(196-395)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.73

92.732

0.461