Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY45_RS04110 Genome accession   NZ_CP046785
Coordinates   806614..807471 (-) Length   285 a.a.
NCBI ID   WP_192868634.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 801614..812471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS04085 pyrE 802585..803226 (-) 642 WP_005458955.1 orotate phosphoribosyltransferase -
  GPY45_RS04090 rph 803331..804047 (-) 717 WP_005459025.1 ribonuclease PH -
  GPY45_RS04095 - 804262..805128 (+) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GPY45_RS04100 - 805183..805608 (-) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  GPY45_RS04105 - 805738..806577 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY45_RS04110 amiE 806614..807471 (-) 858 WP_192868634.1 ABC transporter ATP-binding protein Regulator
  GPY45_RS04115 - 807481..809307 (-) 1827 WP_089202839.1 extracellular solute-binding protein -
  GPY45_RS04120 - 809346..810388 (-) 1043 Protein_737 ABC transporter permease -
  GPY45_RS04125 - 810390..811415 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31584.61 Da        Isoelectric Point: 4.4929

>NTDB_id=355697 GPY45_RS04110 WP_192868634.1 806614..807471(-) (amiE) [Vibrio parahaemolyticus strain 2013V-1136]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNESKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355697 GPY45_RS04110 WP_192868634.1 806614..807471(-) (amiE) [Vibrio parahaemolyticus strain 2013V-1136]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCTATCATGGGACTGTTGCCAAAGCCTTACGGAAATATTGTCAATGGTGAGGTTAACTATCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATTTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAATCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-275)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

49.818

96.491

0.481
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361