Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GS03_RS03925 Genome accession   NZ_CP038810
Coordinates   879754..881115 (-) Length   453 a.a.
NCBI ID   WP_136151268.1    Uniprot ID   A0A4P7PST2
Organism   Flavobacterium sangjuense strain GS03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874754..886115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS03_RS03910 (GS03_00783) - 876538..877284 (+) 747 WP_136151265.1 LytTR family DNA-binding domain-containing protein -
  GS03_RS03915 (GS03_00784) - 877286..879235 (-) 1950 WP_136151266.1 transglycosylase domain-containing protein -
  GS03_RS03920 (GS03_00785) - 879232..879696 (-) 465 WP_136151267.1 hypothetical protein -
  GS03_RS03925 (GS03_00786) radA 879754..881115 (-) 1362 WP_136151268.1 DNA repair protein RadA Machinery gene
  GS03_RS03930 (GS03_00787) - 881115..882410 (-) 1296 WP_136151269.1 alpha/beta hydrolase -
  GS03_RS03935 (GS03_00788) - 882470..883435 (-) 966 WP_136151270.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GS03_RS03940 (GS03_00789) panD 883442..883792 (-) 351 WP_136151271.1 aspartate 1-decarboxylase -
  GS03_RS03945 (GS03_00790) panC 883807..884655 (-) 849 WP_136153055.1 pantoate--beta-alanine ligase -
  GS03_RS03950 (GS03_00791) - 884762..885568 (+) 807 WP_136151272.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50038.41 Da        Isoelectric Point: 6.2762

>NTDB_id=355696 GS03_RS03925 WP_136151268.1 879754..881115(-) (radA) [Flavobacterium sangjuense strain GS03]
MSKVKTTFFCQNCGAQYAKWQGQCNSCKEWNTIAEEIIQKEEKTSWKPSSTDSKRVSKPLRIKEIDSTQEVRMDSTDGEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPNSDNCYILTETKTQNIFRHI
VETEPDIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISHREEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIAVGKDVCFAGEVGLSGEI
RPINRVEQRIQEAEKLGFSTIFVSKYNKIATKFPGIKIVLVSKIEEVVEQLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=355696 GS03_RS03925 WP_136151268.1 879754..881115(-) (radA) [Flavobacterium sangjuense strain GS03]
ATGTCTAAAGTAAAAACTACTTTTTTTTGCCAAAATTGCGGTGCTCAATATGCCAAATGGCAAGGCCAATGCAATTCGTG
CAAAGAATGGAATACCATTGCCGAAGAGATTATTCAAAAGGAAGAAAAAACAAGTTGGAAACCTTCGAGTACCGATTCTA
AAAGAGTTTCAAAACCACTTCGTATTAAAGAAATCGATTCCACTCAGGAAGTGCGAATGGACAGCACTGACGGCGAATTA
AATCGTGTGCTTGGCGGCGGAATTGTTCCGGGTTCACTAATCCTTTTAGGCGGAGAACCAGGCATTGGAAAAAGCACCTT
GCTGCTGCAGATTTCTTTAAAATTACCTTATAAAACCTTATATGTTTCGGGCGAAGAAAGTCAGAAACAAATCAAAATGC
GTGCAGAAAGGATTAATCCGAATAGTGACAATTGCTACATTTTAACCGAAACCAAAACCCAAAATATCTTTCGGCATATT
GTAGAAACCGAACCCGATATTGTCATCATCGATTCGATACAAACATTACACACCGATTATATAGAATCCACAGCGGGAAG
CATTTCGCAGATTAGGGAAACTACAGCAGAGTTAATAAAGTTTGCCAAAGAAACCAATATTCCGGTTATACTAATTGGCC
ATATCACCAAAGACGGAAACATTGCCGGACCAAAAATTTTGGAACACATGGTCGACACAGTGCTCCAATTTGAAGGCGAC
AGAAATCATGTCTACCGAATACTCCGTTCCCTCAAAAACCGTTTTGGTTCTACTGCCGAATTGGGAATTTACGAAATGCA
AGGTTCAGGTTTGCGCGAAGTTTCCAATCCATCAGAGATATTAATTTCGCATCGCGAAGAAGAGCTTTCGGGAACGGCAA
TTGCCTCAACACTGGAAGGCATGCGTCCTTTGATGATAGAAATTCAGGCGTTGGTATCGACCGCAGTTTATGGAACGCCA
CAACGAAGCACCACAGGTTATAATGCCAAACGACTGAATATGATTTTGGCCGTATTAGAAAAACGTGCCGGCTTCCGTTT
GGGAACAAAAGATGTTTTCCTAAATGTAACCGGCGGAATTTCTGTTGATGATCCGGCGATTGATTTGGCTGTTGTTGCTG
CAATCTTGTCTTCTAATGAAGATATCGCTGTGGGCAAAGATGTTTGTTTTGCAGGCGAGGTTGGACTTTCGGGCGAAATC
CGTCCAATAAACCGTGTTGAGCAACGTATTCAGGAAGCAGAAAAATTAGGTTTTTCAACGATTTTTGTTTCCAAATACAA
TAAGATTGCGACCAAGTTTCCCGGAATAAAAATCGTTTTGGTGTCCAAAATTGAAGAAGTTGTCGAACAGTTGTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7PST2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.904

100

0.492
  radA Streptococcus pneumoniae Rx1

48.904

100

0.492
  radA Streptococcus pneumoniae D39

48.904

100

0.492
  radA Streptococcus mitis SK321

48.904

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

48.904

100

0.492
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.488

Multiple sequence alignment