Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY39_RS15285 Genome accession   NZ_CP046783
Coordinates   3012996..3013853 (+) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007996..3018853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS15270 - 3009051..3010076 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  GPY39_RS15275 - 3010078..3011121 (+) 1044 WP_015296095.1 ABC transporter permease subunit -
  GPY39_RS15280 - 3011160..3012986 (+) 1827 WP_005458972.1 extracellular solute-binding protein -
  GPY39_RS15285 amiE 3012996..3013853 (+) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY39_RS15290 - 3013890..3014729 (+) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY39_RS15295 - 3014859..3015284 (+) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY39_RS15300 - 3015339..3016205 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GPY39_RS15305 rph 3016420..3017136 (+) 717 WP_005459025.1 ribonuclease PH -
  GPY39_RS15310 pyrE 3017241..3017882 (+) 642 WP_021448978.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355672 GPY39_RS15285 WP_005496771.1 3012996..3013853(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1181]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355672 GPY39_RS15285 WP_005496771.1 3012996..3013853(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCAA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCCACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACAGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361

Multiple sequence alignment