Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY39_RS13670 | Genome accession | NZ_CP046783 |
| Coordinates | 2697369..2698586 (-) | Length | 405 a.a. |
| NCBI ID | WP_005481951.1 | Uniprot ID | Q87KM1 |
| Organism | Vibrio parahaemolyticus strain 2013V-1181 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2692369..2703586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY39_RS13640 | - | 2692554..2692964 (+) | 411 | WP_005460376.1 | flagellar basal body-associated protein FliL | - |
| GPY39_RS13645 | glpG | 2693024..2693866 (-) | 843 | WP_005496414.1 | rhomboid family intramembrane serine protease GlpG | - |
| GPY39_RS13650 | glpE | 2693866..2694186 (-) | 321 | WP_005460380.1 | thiosulfate sulfurtransferase GlpE | - |
| GPY39_RS13655 | rpoH | 2694678..2695538 (-) | 861 | WP_005490420.1 | RNA polymerase sigma factor RpoH | - |
| GPY39_RS13660 | ftsX | 2695714..2696682 (-) | 969 | WP_021449823.1 | permease-like cell division protein FtsX | - |
| GPY39_RS13665 | ftsE | 2696672..2697346 (-) | 675 | WP_005481953.1 | cell division ATP-binding protein FtsE | - |
| GPY39_RS13670 | pilA | 2697369..2698586 (-) | 1218 | WP_005481951.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GPY39_RS13675 | rsmD | 2698810..2699409 (+) | 600 | WP_021449824.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GPY39_RS13680 | - | 2699435..2699701 (+) | 267 | WP_005496405.1 | DUF1145 domain-containing protein | - |
| GPY39_RS13685 | - | 2699756..2700340 (-) | 585 | WP_021449825.1 | YhgN family NAAT transporter | - |
| GPY39_RS13690 | - | 2700460..2700681 (-) | 222 | WP_015297472.1 | YecH family metal-binding protein | - |
| GPY39_RS13695 | - | 2700751..2701371 (-) | 621 | WP_005481960.1 | lysoplasmalogenase | - |
| GPY39_RS13705 | - | 2702106..2702285 (+) | 180 | WP_021449827.1 | hypothetical protein | - |
| GPY39_RS13710 | - | 2702349..2702717 (-) | 369 | WP_005489749.1 | hypothetical protein | - |
| GPY39_RS13715 | - | 2702959..2703288 (+) | 330 | WP_015297474.1 | DUF2500 domain-containing protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44154.75 Da Isoelectric Point: 4.2881
>NTDB_id=355659 GPY39_RS13670 WP_005481951.1 2697369..2698586(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1181]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLT
EKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTF
RAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAP
HEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDAL
FSREE
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLT
EKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTF
RAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAP
HEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDAL
FSREE
Nucleotide
Download Length: 1218 bp
>NTDB_id=355659 GPY39_RS13670 WP_005481951.1 2697369..2698586(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1181]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTTTTCGCTCGCCTTAA
ACGTAGCTTAAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGTTTGTTCAGCGGTAAAAAAATCGATGACGACC
TATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACA
GAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCCCTTTATGGCCTGCTGAAAGAAGAAATGGCGGAGATTTTATC
TAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTA
AAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTC
CGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGA
CAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTC
GTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCA
CATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCC
TCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTA
TTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTG
TTTAGCCGTGAAGAGTAA
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTTTTCGCTCGCCTTAA
ACGTAGCTTAAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGTTTGTTCAGCGGTAAAAAAATCGATGACGACC
TATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACA
GAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCCCTTTATGGCCTGCTGAAAGAAGAAATGGCGGAGATTTTATC
TAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTA
AAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTC
CGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGA
CAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTC
GTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCA
CATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCC
TCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTA
TTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTG
TTTAGCCGTGAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
49.731 |
91.852 |
0.457 |