Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY39_RS09390 Genome accession   NZ_CP046783
Coordinates   1829301..1829900 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1824301..1834900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS09365 - 1824407..1825066 (-) 660 WP_005397228.1 PAS domain-containing protein -
  GPY39_RS09370 - 1825095..1826372 (-) 1278 WP_021449880.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY39_RS09375 - 1826388..1826768 (-) 381 WP_021449881.1 RidA family protein -
  GPY39_RS09380 - 1827086..1828345 (+) 1260 WP_021449882.1 amino acid permease -
  GPY39_RS09385 aqpZ 1828552..1829250 (+) 699 WP_005460095.1 aquaporin Z -
  GPY39_RS09390 recR 1829301..1829900 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GPY39_RS09395 - 1829930..1830259 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY39_RS09400 dnaX 1830342..1832477 (-) 2136 WP_021449884.1 DNA polymerase III subunit gamma/tau -
  GPY39_RS09405 apt 1832486..1833031 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY39_RS09410 - 1833197..1833544 (-) 348 WP_023585236.1 YbaN family protein -
  GPY39_RS26620 - 1833617..1833748 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355629 GPY39_RS09390 WP_005460088.1 1829301..1829900(-) (recR) [Vibrio parahaemolyticus strain 2013V-1181]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355629 GPY39_RS09390 WP_005460088.1 1829301..1829900(-) (recR) [Vibrio parahaemolyticus strain 2013V-1181]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCTGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment