Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CTCNB1_RS20345 Genome accession   NC_013446
Coordinates   4474396..4474800 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas thiooxydans     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4469396..4479800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTCNB1_RS20330 (CtCNB1_3986) - 4471228..4473471 (-) 2244 WP_012839727.1 methyl-accepting chemotaxis protein -
  CTCNB1_RS20335 (CtCNB1_3987) - 4473491..4474018 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  CTCNB1_RS20340 (CtCNB1_3988) - 4474034..4474396 (-) 363 WP_003071159.1 response regulator -
  CTCNB1_RS20345 (CtCNB1_3989) pilG 4474396..4474800 (-) 405 WP_003071158.1 response regulator Regulator
  CTCNB1_RS25105 (CtCNB1_3990) - 4474851..4475003 (-) 153 WP_034399566.1 rubredoxin -
  CTCNB1_RS20350 (CtCNB1_3991) thiD 4475119..4476087 (+) 969 WP_012839730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CTCNB1_RS20355 (CtCNB1_3992) hemL 4476071..4477375 (+) 1305 WP_012839731.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CTCNB1_RS20360 (CtCNB1_3993) - 4477538..4479310 (+) 1773 WP_041744656.1 alkaline phosphatase D family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=35562 CTCNB1_RS20345 WP_003071158.1 4474396..4474800(-) (pilG) [Comamonas thiooxydans]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=35562 CTCNB1_RS20345 WP_003071158.1 4474396..4474800(-) (pilG) [Comamonas thiooxydans]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGCCAGGACTA
TCTGACCAAACCGTTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507

Multiple sequence alignment