Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY17_RS24600 Genome accession   NZ_CP046782
Coordinates   3254819..3256042 (-) Length   407 a.a.
NCBI ID   WP_005491145.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3249819..3261042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS24570 - 3250004..3250414 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  GPY17_RS24575 glpG 3250474..3251316 (-) 843 WP_025510242.1 rhomboid family intramembrane serine protease GlpG -
  GPY17_RS24580 glpE 3251316..3251636 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY17_RS24585 rpoH 3252128..3252988 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY17_RS24590 ftsX 3253164..3254132 (-) 969 WP_005481956.1 permease-like cell division protein FtsX -
  GPY17_RS24595 ftsE 3254122..3254796 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY17_RS24600 pilA 3254819..3256042 (-) 1224 WP_005491145.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY17_RS24605 rsmD 3256266..3256865 (+) 600 WP_069545322.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY17_RS24610 - 3256891..3257157 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY17_RS24615 - 3257210..3257794 (-) 585 WP_042773029.1 YhgN family NAAT transporter -
  GPY17_RS24620 - 3257914..3258135 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  GPY17_RS24625 - 3258205..3258825 (-) 621 WP_005481960.1 lysoplasmalogenase -
  GPY17_RS24635 - 3259560..3259739 (+) 180 WP_005458791.1 hypothetical protein -
  GPY17_RS24640 - 3259803..3260171 (-) 369 WP_005489749.1 hypothetical protein -
  GPY17_RS24645 - 3260413..3260742 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44354.94 Da        Isoelectric Point: 4.2729

>NTDB_id=355594 GPY17_RS24600 WP_005491145.1 3254819..3256042(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1244]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINN
LTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGD
TFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDS
APHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFID
ALFSREE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=355594 GPY17_RS24600 WP_005491145.1 3254819..3256042(-) (pilA) [Vibrio parahaemolyticus strain 2013V-1244]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTTTTCGCTCG
CCTTAAACGTAGCTTAAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGTTTGTTCAGCGGTAAAAAAATCGATG
ACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAAC
CTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGAT
TCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGAATGGTG
TGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGAT
ACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGG
CGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGG
CGGGTCGTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCT
GCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGT
AGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGT
TTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGAC
GCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(123-184)

SRP54-type protein, GTPase domain (SRP54)

(204-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.629

0.455