Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY17_RS20240 Genome accession   NZ_CP046782
Coordinates   2377246..2377845 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372246..2382845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS20215 - 2372354..2373013 (-) 660 WP_005397228.1 PAS domain-containing protein -
  GPY17_RS20220 - 2373042..2374319 (-) 1278 WP_031856378.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY17_RS20225 - 2374335..2374715 (-) 381 WP_005479566.1 RidA family protein -
  GPY17_RS20230 - 2375033..2376290 (+) 1258 Protein_2114 hypothetical protein -
  GPY17_RS20235 aqpZ 2376497..2377195 (+) 699 WP_005460095.1 aquaporin Z -
  GPY17_RS20240 recR 2377246..2377845 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GPY17_RS20245 - 2377875..2378204 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY17_RS20250 dnaX 2378287..2380428 (-) 2142 WP_042773050.1 DNA polymerase III subunit gamma/tau -
  GPY17_RS20255 apt 2380437..2380982 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY17_RS20260 - 2381148..2381495 (-) 348 WP_023585236.1 YbaN family protein -
  GPY17_RS24990 - 2381568..2381699 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355564 GPY17_RS20240 WP_005460088.1 2377246..2377845(-) (recR) [Vibrio parahaemolyticus strain 2013V-1244]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355564 GPY17_RS20240 WP_005460088.1 2377246..2377845(-) (recR) [Vibrio parahaemolyticus strain 2013V-1244]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment