Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY17_RS16070 Genome accession   NZ_CP046782
Coordinates   1514883..1515863 (-) Length   326 a.a.
NCBI ID   WP_042772851.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509883..1520863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS16055 - 1510380..1512824 (+) 2445 WP_083110741.1 collagenase -
  GPY17_RS16065 - 1513077..1514873 (-) 1797 WP_083110742.1 aminopeptidase P family protein -
  GPY17_RS16070 amiE 1514883..1515863 (-) 981 WP_042772851.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY17_RS16075 - 1515873..1516856 (-) 984 WP_176092046.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY17_RS16080 - 1516867..1517799 (-) 933 WP_017448602.1 ABC transporter permease subunit -
  GPY17_RS16085 oppB 1517809..1518729 (-) 921 WP_089183535.1 oligopeptide ABC transporter permease OppB -
  GPY17_RS16090 - 1518896..1520506 (-) 1611 WP_053805738.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36310.13 Da        Isoelectric Point: 7.8596

>NTDB_id=355550 GPY17_RS16070 WP_042772851.1 1514883..1515863(-) (amiE) [Vibrio parahaemolyticus strain 2013V-1244]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMLGFSKNKLARCRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355550 GPY17_RS16070 WP_042772851.1 1514883..1515863(-) (amiE) [Vibrio parahaemolyticus strain 2013V-1244]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATAGAGGTGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCTTGGCTTCAGCAAAAACAAGTTAGCGCGTTGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGCTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCTCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCGATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.836

95.399

0.39
  amiE Streptococcus thermophilus LMD-9

40.836

95.399

0.39
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus salivarius strain HSISS4

45.091

84.356

0.38
  amiF Streptococcus thermophilus LMG 18311

45.055

83.742

0.377
  amiF Streptococcus thermophilus LMD-9

44.689

83.742

0.374
  oppD Streptococcus mutans UA159

38.339

96.012

0.368