Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY17_RS10105 Genome accession   NZ_CP046782
Coordinates   294177..295034 (+) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 289177..300034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS10090 - 290233..291258 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  GPY17_RS10095 - 291260..292302 (+) 1043 Protein_249 ABC transporter permease subunit -
  GPY17_RS10100 - 292341..294167 (+) 1827 WP_029853916.1 extracellular solute-binding protein -
  GPY17_RS10105 amiE 294177..295034 (+) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY17_RS10110 - 295071..295910 (+) 840 WP_025789357.1 ATP-binding cassette domain-containing protein -
  GPY17_RS10115 - 296040..296465 (+) 426 WP_025504112.1 phosphate-starvation-inducible PsiE family protein -
  GPY17_RS10120 - 296520..297386 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GPY17_RS10125 rph 297601..298317 (+) 717 WP_005459025.1 ribonuclease PH -
  GPY17_RS10130 pyrE 298422..299063 (+) 642 WP_025789358.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355518 GPY17_RS10105 WP_005496771.1 294177..295034(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1244]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355518 GPY17_RS10105 WP_005496771.1 294177..295034(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1244]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCTATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGTTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGTCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATCTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGTTGTTTGACAATCCGCAGCACCCTTACACGGAACGATTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361

Multiple sequence alignment