Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY25_RS09760 Genome accession   NZ_CP046779
Coordinates   1957820..1958800 (-) Length   326 a.a.
NCBI ID   WP_005454798.1    Uniprot ID   Q87Q07
Organism   Vibrio parahaemolyticus strain 2014V-1066     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952820..1963800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY25_RS09745 - 1953317..1955761 (+) 2445 WP_005495450.1 collagenase -
  GPY25_RS09755 - 1956014..1957810 (-) 1797 WP_005495449.1 aminopeptidase P family protein -
  GPY25_RS09760 amiE 1957820..1958800 (-) 981 WP_005454798.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY25_RS09765 - 1958810..1959793 (-) 984 WP_005495447.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY25_RS09770 - 1959804..1960736 (-) 933 WP_005495445.1 ABC transporter permease subunit -
  GPY25_RS09775 oppB 1960746..1961666 (-) 921 WP_005454907.1 oligopeptide ABC transporter permease OppB -
  GPY25_RS09780 - 1961833..1963443 (-) 1611 WP_005495443.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36406.21 Da        Isoelectric Point: 8.3113

>NTDB_id=355480 GPY25_RS09760 WP_005454798.1 1957820..1958800(-) (amiE) [Vibrio parahaemolyticus strain 2014V-1066]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355480 GPY25_RS09760 WP_005454798.1 1957820..1958800(-) (amiE) [Vibrio parahaemolyticus strain 2014V-1066]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGACCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCACGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAGCCTCAACTTAAACGCGCCGAAG
TCGAAAAACGAGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCTCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTAATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87Q07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368