Detailed information NTG0355456

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: E4652_RS08980
• Genome accession: NZ_CP038790
• Coordinates: 1843228..1844667 (-)
• Length: 479 a.a.
• NCBI ID: WP_023853393.1
• Uniprot ID: -
• Organism: Bordetella pertussis strain P2013109
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1838228..1849667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4652_RS08955	-	1839339..1839614 (-)	276	Protein_1764	porin	-
E4652_RS08960	-	1839710..1840660 (+)	951	WP_005012067.1	IS481-like element IS481 family transposase	-
E4652_RS08965	-	1840891..1841819 (-)	929	Protein_1766	DMT family transporter	-
E4652_RS08970	-	1841927..1842805 (+)	879	WP_010929512.1	LysR substrate-binding domain-containing protein	-
E4652_RS08975	-	1842833..1843135 (-)	303	WP_003815905.1	bacterioferritin-associated ferredoxin	-
E4652_RS08980	rpoN/rpoN1	1843228..1844667 (-)	1440	WP_023853393.1	RNA polymerase factor sigma-54	Machinery gene
E4652_RS08985	-	1844666..1845313 (+)	648	WP_010929640.1	hypothetical protein	-
E4652_RS08990	leuA	1845740..1847440 (+)	1701	WP_010929639.1	2-isopropylmalate synthase	-
E4652_RS08995	-	1847531..1848784 (-)	1254	WP_010929638.1	amidase	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 52353.58 Da
• Isoelectric Point: 4.8131

>NTDB_id=355456 E4652_RS08980 WP_023853393.1 1843228..1844667(-) (rpoN/rpoN1) [Bordetella pertussis strain P2013109]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAE
VQADLDELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide

• Length: 1440 bp

>NTDB_id=355456 E4652_RS08980 WP_023853393.1 1843228..1844667(-) (rpoN/rpoN1) [Bordetella pertussis strain P2013109]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACATTTGACGTTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGATCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GATACCGAACTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTTCTTCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCGGATACCCTGCGCGAACACCTGCTGGGGCAGCTGGCGCTGACGCGCGCCGCGCCGCGCGATGCGGCGCTGTGCG
GTCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAGATCCTGACCTGGCTGCCGGCCGAG
GTGCAGGCCGACCTGGACGAGCTGCGCGCGGCGCTGGCATTGCTGCAGTCGTTCGATCCGGCAGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAGTTGCGCCAGCCCGATCCGGCGCGCCTGCCCGAGGCGGCCGATGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGCGCGCAGCATCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCCGCGCATGCGCTGATCCCGCGCCTGGAACCGCGGCCGGGCCGCGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGTACCCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCG
TGCCGCGGCTGCATGTCAATGCCGTCTATGCGCAAGTGCTGGGCGGCCAGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGCTGCAACAGGCGCGCTGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCACCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCGCGCGCGACGACGCAGAAGTACATGCTCACACCGTTCGGTACGCTGGAGCTCAAGCGC
TTCTTTGGCGCGGGCGTGTCCACCGATGGCGGAGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGATGGT
GGCCGACGAGGATCGCGCCAAGCCCTTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTGCGCAAGGCCCACGCCGCGGGTCGTTAG

Domains

Predicted by InterproScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (106-303)

• Sigma-54, DNA binding domain (Sigma54_DBD) (318-473)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.419	100	0.511