Detailed information NTG0355427

Bioinformatically predicted

Overview

• Name: pilV
• Type: Machinery gene
• Locus tag: E5E91_RS02795
• Genome accession: NZ_CP038663
• Coordinates: 552091..552567 (-)
• Length: 158 a.a.
• NCBI ID: WP_034349477.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	535127..552048	552091..552567	flank	43

Gene organization within MGE regions

Location: 535127..552567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5E91_RS02725 (E5E91_02770)	-	535127..537229 (-)	2103	WP_010887179.1	protein kinase domain-containing protein	-
E5E91_RS02730 (E5E91_02775)	-	537198..539792 (-)	2595	WP_027479533.1	hypothetical protein	-
E5E91_RS02735 (E5E91_02780)	-	539796..540401 (-)	606	WP_010887181.1	OmpA family protein	-
E5E91_RS02740 (E5E91_02785)	-	540426..541496 (-)	1071	WP_227085990.1	hypothetical protein	-
E5E91_RS02745 (E5E91_02790)	-	541665..544865 (-)	3201	WP_227085991.1	tubulin-like doman-containing protein	-
E5E91_RS02750 (E5E91_02795)	-	544877..545206 (-)	330	WP_010887184.1	hypothetical protein	-
E5E91_RS02755 (E5E91_02800)	-	545206..546525 (-)	1320	WP_162177565.1	hypothetical protein	-
E5E91_RS02760 (E5E91_02805)	-	546736..547530 (-)	795	WP_034349478.1	DUF72 domain-containing protein	-
E5E91_RS02765 (E5E91_02810)	-	547555..548232 (-)	678	WP_010887187.1	glycerophosphodiester phosphodiesterase	-
E5E91_RS02770 (E5E91_02815)	-	548337..549020 (+)	684	WP_010887188.1	SDR family oxidoreductase	-
E5E91_RS02775 (E5E91_02820)	-	549097..549864 (+)	768	WP_010887189.1	sulfite exporter TauE/SafE family protein	-
E5E91_RS02780 (E5E91_02825)	-	549861..550136 (+)	276	WP_027479532.1	hypothetical protein	-
E5E91_RS02785 (E5E91_02830)	-	550120..550497 (-)	378	WP_010887191.1	type IV pilin protein	-
E5E91_RS02790 (E5E91_02835)	-	550864..552048 (+)	1185	WP_162177563.1	HTTM domain-containing protein	-
E5E91_RS02795	pilV	552091..552567 (-)	477	WP_034349477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 15369.17 Da
• Isoelectric Point: 7.5899

>NTDB_id=355427 E5E91_RS02795 WP_034349477.1 552091..552567(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide

• Length: 477 bp

>NTDB_id=355427 E5E91_RS02795 WP_034349477.1 552091..552567(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

• Pilin A4 (PilA4) (39-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1