Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   GPY34_RS23035 Genome accession   NZ_CP046778
Coordinates   2924985..2926817 (+) Length   610 a.a.
NCBI ID   WP_005494715.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2919985..2931817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS23020 - 2920712..2921479 (+) 768 WP_021447485.1 nucleotidyltransferase domain-containing protein -
  GPY34_RS23025 - 2921476..2923839 (-) 2364 WP_005489176.1 DNA polymerase II -
  GPY34_RS23030 letA 2924339..2924983 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY34_RS23035 uvrC 2924985..2926817 (+) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  GPY34_RS23040 pgsA 2926864..2927421 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69248.43 Da        Isoelectric Point: 9.5525

>NTDB_id=355416 GPY34_RS23035 WP_005494715.1 2924985..2926817(+) (uvrC) [Vibrio parahaemolyticus strain 2014V-1125]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=355416 GPY34_RS23035 WP_005494715.1 2924985..2926817(+) (uvrC) [Vibrio parahaemolyticus strain 2014V-1125]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTTATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTGCCGAAATACAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGTGGTCATAAACATCCGAGATTGTCGATGCACCGTGGGGCCAAGAAGCGTAAAGGAGAGTATTTTGGTCCTTACCCTG
ACTCAGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGACACGGTTTACTCT
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGCTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCTAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGACGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATTGCTTGCAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGTCACAATGAGGCGCGGACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCCATTCAAAAAGCACTGAGTGAAGTCGCAGGGCGTAAGGTTCATTTCCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAGCTGTCTAATACCAATGCACTTACTGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGCTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAACATTACTGGAATCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGGCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCAAGTGATGCTCCAGCCTTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGCGCGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAGGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGTGCAAGTGT
TGAAGAAATCGCCAAAGTACCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.244

99.508

0.361

Multiple sequence alignment