Detailed information NTG0355376

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: GPY34_RS17405
• Genome accession: NZ_CP046778
• Coordinates: 1781153..1782988 (+)
• Length: 611 a.a.
• NCBI ID: WP_005497387.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2014V-1125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1776153..1787988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY34_RS17385	ggt	1776570..1778330 (-)	1761	WP_005497383.1	gamma-glutamyltransferase	-
GPY34_RS17390	-	1778441..1779100 (-)	660	WP_005497384.1	LysE family translocator	-
GPY34_RS17395	-	1779192..1779989 (-)	798	WP_023650110.1	AraC family transcriptional regulator	-
GPY34_RS17400	rarD	1780064..1780978 (-)	915	WP_005497386.1	EamA family transporter RarD	-
GPY34_RS17405	recQ	1781153..1782988 (+)	1836	WP_005497387.1	ATP-dependent DNA helicase RecQ	Machinery gene
GPY34_RS17410	-	1782998..1783303 (+)	306	WP_005497389.1	DUF3630 family protein	-
GPY34_RS17420	-	1783595..1784263 (+)	669	WP_005497391.1	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	-
GPY34_RS17425	gppA	1784460..1785953 (-)	1494	WP_005480964.1	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	-
GPY34_RS17430	rhlB	1785973..1787286 (-)	1314	WP_005458582.1	ATP-dependent RNA helicase RhlB	-
GPY34_RS17435	trxA	1787398..1787724 (+)	327	WP_005458583.1	thioredoxin TrxA	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69213.10 Da
• Isoelectric Point: 6.8897

>NTDB_id=355376 GPY34_RS17405 WP_005497387.1 1781153..1782988(+) (recQ) [Vibrio parahaemolyticus strain 2014V-1125]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide

• Length: 1836 bp

>NTDB_id=355376 GPY34_RS17405 WP_005497387.1 1781153..1782988(+) (recQ) [Vibrio parahaemolyticus strain 2014V-1125]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCAACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTGATGCGTGACT
TCATCGAGCGCCTCGAAAATCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAATGGGGACACGAT
TTCCGTCCTGAATACGCCGCGCTGGGTCAGCTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGCTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGCTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCTATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGTATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGTGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTGAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGTATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGCTGTTTCAAAATATTACTCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCGACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATTACTCACCACGGATAA

Domains

Predicted by InterProScan.

• DEAD/DEAH box helicase (DEAD) (31-189)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.541	96.89	0.393