Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4177_RS21340 Genome accession   NZ_CP038656
Coordinates   4348101..4348715 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 565     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4343101..4353715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4177_RS21325 (E4177_21900) helD 4343325..4345379 (-) 2055 WP_003035894.1 DNA helicase IV -
  E4177_RS21330 (E4177_21905) - 4345505..4345951 (+) 447 WP_003035892.1 YccF domain-containing protein -
  E4177_RS21335 (E4177_21910) yccS 4345970..4348123 (+) 2154 WP_008320230.1 YccS family putative transporter -
  E4177_RS21340 (E4177_21915) sxy/tfoX 4348101..4348715 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  E4177_RS21345 (E4177_21920) sulA 4348933..4349442 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  E4177_RS21350 (E4177_21925) ompA 4349800..4350846 (+) 1047 WP_003035883.1 porin OmpA -
  E4177_RS21355 (E4177_21930) matP 4350936..4351388 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  E4177_RS21360 (E4177_21935) - 4351574..4353334 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=355375 E4177_RS21340 WP_003035889.1 4348101..4348715(-) (sxy/tfoX) [Citrobacter freundii strain 565]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=355375 E4177_RS21340 WP_003035889.1 4348101..4348715(-) (sxy/tfoX) [Citrobacter freundii strain 565]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGTTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment