Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY34_RS15950 Genome accession   NZ_CP046778
Coordinates   1491455..1492312 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486455..1497312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS15925 - 1487164..1488036 (+) 873 WP_005496775.1 hypothetical protein -
  GPY34_RS15930 - 1488196..1488513 (+) 318 WP_005496774.1 helix-turn-helix transcriptional regulator -
  GPY34_RS15935 - 1488525..1489763 (+) 1239 WP_005496773.1 type II toxin-antitoxin system HipA family toxin -
  GPY34_RS15940 - 1490024..1490449 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY34_RS15945 - 1490579..1491418 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY34_RS15950 amiE 1491455..1492312 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY34_RS15955 - 1492322..1494148 (-) 1827 WP_005496757.1 extracellular solute-binding protein -
  GPY34_RS15960 - 1494187..1495230 (-) 1044 WP_005496756.1 ABC transporter permease subunit -
  GPY34_RS15965 - 1495232..1496257 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355365 GPY34_RS15950 WP_005496771.1 1491455..1492312(-) (amiE) [Vibrio parahaemolyticus strain 2014V-1125]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355365 GPY34_RS15950 WP_005496771.1 1491455..1492312(-) (amiE) [Vibrio parahaemolyticus strain 2014V-1125]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTAGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGTGTTACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGAAATATTGTCAATGGTGAGGTTAACTATCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CTTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTAATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACAGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361