Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E5D16_RS13560 Genome accession   NZ_CP038642
Coordinates   2657005..2658810 (+) Length   601 a.a.
NCBI ID   WP_014931612.1    Uniprot ID   A0A418RWH5
Organism   Listeria monocytogenes strain N12-0935     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652005..2663810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5D16_RS13535 (E5D16_13535) - 2652052..2653128 (+) 1077 WP_012951901.1 ABC transporter ATP-binding protein -
  E5D16_RS13540 (E5D16_13540) - 2653125..2654093 (+) 969 WP_003722315.1 ATP-binding cassette domain-containing protein -
  E5D16_RS13545 (E5D16_13545) spxA 2654411..2654806 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  E5D16_RS13550 (E5D16_13550) mecA 2655038..2655691 (+) 654 WP_003722314.1 adaptor protein MecA -
  E5D16_RS13555 (E5D16_13555) - 2655817..2656932 (+) 1116 WP_009912419.1 competence protein CoiA -
  E5D16_RS13560 (E5D16_13560) pepF 2657005..2658810 (+) 1806 WP_014931612.1 oligoendopeptidase F Regulator
  E5D16_RS13565 (E5D16_13565) - 2659109..2659369 (+) 261 WP_003722311.1 DUF3116 family protein -
  E5D16_RS13570 (E5D16_13570) isdC 2659580..2660203 (+) 624 WP_003731900.1 heme uptake protein IsdC -
  E5D16_RS13575 (E5D16_13575) hbp2 2660218..2661927 (+) 1710 WP_003722309.1 hemin/hemoglobin-binding protein Hbp2 -
  E5D16_RS13580 (E5D16_13580) isdE 2662014..2662886 (+) 873 WP_031671991.1 heme ABC transporter substrate-binding protein IsdE -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68631.67 Da        Isoelectric Point: 4.5740

>NTDB_id=355284 E5D16_RS13560 WP_014931612.1 2657005..2658810(+) (pepF) [Listeria monocytogenes strain N12-0935]
MSKTNALPLREEVPENLTWDLTTIYPNDETWEKAFTDLQKITEESDQFKGRLSESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDENVLKQFLDENKDLQLYDHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRRDAFHGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANASLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQDAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEELVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=355284 E5D16_RS13560 WP_014931612.1 2657005..2658810(+) (pepF) [Listeria monocytogenes strain N12-0935]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTGACTACGATTTATCCGAA
TGATGAAACATGGGAAAAAGCATTTACGGATTTGCAAAAAATCACAGAGGAAAGCGACCAATTTAAAGGTCGTTTATCGG
AAAGTAGCCAAACACTTTATGAAGCACTTCAATTTCGAGATAAAGCATATGATTTGATTAGTAACTTATATGTATATGCT
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGTGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTCTCTTACTATGACCCAGAAATTTTAGCTATGGATGAAAATGTTCTAAAACAATTTTTAGATGAGAATA
AAGATTTACAATTATATGATCATTTGTTGGAAGAGTTAAATTTAAGTCGACCTTATATTTTGAGTGAGAAGGAAGAGGCT
TTACTAGCTAATGCAGGTGAAGTGCTTGGAAGTTCTTCCAATACTTTTAATACCTTGAATAATGCTGATATGAAGTTTCC
AACTATTAAAGATGAAAATGGGGAAGATATCGAAATTACTCATGGCCGTTTTGGGAAATTGTTAGAAAGTAATGATCCAC
GAGTGCGTCGTGATGCATTTCATGGTGTGTATTCAGTTTATGAAGGATTAAAAAACACATTAGCATCTACTTTAAATGGA
CAAGTGAAAAAATCTAATTTTTATGCTTCTACGCGAGGGTATACATCGGCTCGTGAAGCGGCTCTCTCTGGTAATCATAT
TCCTGAAACAGTATATGACTCATTGTTGAAATCAGTGAATGCTAATGCAAGTTTGCTTCATCGTTATGTGAAGTTACGTA
AGGAATTACTTGGCTTAGAAGAATTGCATATGTATGACCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTCACT
TATGAGGAAGCAAAAGAACTCGTGCTTGAGGCGCTGAAACCACTTGGTGATGAATATCAAGCGATTTTAAAAGAGGCATT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGGAAACGTAGTGGAGCCTATTCTTCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTACACGCTTGCACATGAATTAGGACATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCATTTGTTTATGGTGATTATTCGATTTTCTTAGCGGAGGTTGCTTCGACTACGAATGA
AAATTTACTAACTGATTATCTGCTTAAGAAATATGATGATCCAAAAGTTCGTGCATACTTGTTGAATCACTATTTGGATG
GATTCAAGGGTACTGTATTCCGTCAAACGCAATTTGCTGAATTTGAACATGCCATTCATCAAGCGGATCAACAAGGAGTG
GCTTTGACTGCGGATTTCTTGACGGAAACATATTTTGATATTAACAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGGATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCAG
CAGCATCTGCATTAAGTGCGAAAATTTTAACAGAAGGTCAAGATGCTGTAACAGCCTATATTGATTTCTTGAAAGCAGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGTGTCGATATGGCGACCCCTAATCCCGTAGATGATGCATTAAA
GGTATTTGAACAAAGATTGGATGAATTGGAAGAGCTGGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418RWH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment