Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY46_RS18565 Genome accession   NZ_CP046776
Coordinates   1930155..1931135 (+) Length   326 a.a.
NCBI ID   WP_005454798.1    Uniprot ID   Q87Q07
Organism   Vibrio parahaemolyticus strain AM43962     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925155..1936135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS18545 - 1925512..1927122 (+) 1611 WP_021486487.1 peptide ABC transporter substrate-binding protein -
  GPY46_RS18550 oppB 1927289..1928209 (+) 921 WP_017448601.1 oligopeptide ABC transporter permease OppB -
  GPY46_RS18555 - 1928219..1929151 (+) 933 WP_020840511.1 ABC transporter permease subunit -
  GPY46_RS18560 - 1929162..1930145 (+) 984 WP_171971070.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY46_RS18565 amiE 1930155..1931135 (+) 981 WP_005454798.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY46_RS18570 - 1931145..1932941 (+) 1797 WP_158127927.1 aminopeptidase P family protein -
  GPY46_RS18580 - 1933192..1935636 (-) 2445 WP_158127929.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36406.21 Da        Isoelectric Point: 8.3113

>NTDB_id=355280 GPY46_RS18565 WP_005454798.1 1930155..1931135(+) (amiE) [Vibrio parahaemolyticus strain AM43962]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355280 GPY46_RS18565 WP_005454798.1 1930155..1931135(+) (amiE) [Vibrio parahaemolyticus strain AM43962]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCAATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87Q07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368