Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY46_RS13960 Genome accession   NZ_CP046776
Coordinates   1033906..1034505 (+) Length   199 a.a.
NCBI ID   WP_025553812.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM43962     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028906..1039505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS25570 - 1030058..1030189 (+) 132 WP_005380608.1 hypothetical protein -
  GPY46_RS13940 - 1030205..1030609 (+) 405 WP_005494429.1 YbaN family protein -
  GPY46_RS13945 apt 1030775..1031320 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY46_RS13950 dnaX 1031329..1033464 (+) 2136 WP_042780744.1 DNA polymerase III subunit gamma/tau -
  GPY46_RS13955 - 1033547..1033876 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY46_RS13960 recR 1033906..1034505 (+) 600 WP_025553812.1 recombination mediator RecR Machinery gene
  GPY46_RS13965 aqpZ 1034556..1035254 (-) 699 WP_005460095.1 aquaporin Z -
  GPY46_RS13970 - 1035461..1036720 (-) 1260 WP_005494432.1 amino acid permease -
  GPY46_RS13975 - 1037038..1037418 (+) 381 WP_025503036.1 RidA family protein -
  GPY46_RS13980 - 1037434..1038711 (+) 1278 WP_025605535.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY46_RS13985 - 1038740..1039399 (+) 660 WP_005397228.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.70 Da        Isoelectric Point: 5.7468

>NTDB_id=355266 GPY46_RS13960 WP_025553812.1 1033906..1034505(+) (recR) [Vibrio parahaemolyticus strain AM43962]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355266 GPY46_RS13960 WP_025553812.1 1033906..1034505(+) (recR) [Vibrio parahaemolyticus strain AM43962]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAAGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437

Multiple sequence alignment