Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   E0W60_RS16130 Genome accession   NZ_CP038635
Coordinates   1144956..1147394 (+) Length   812 a.a.
NCBI ID   WP_135704943.1    Uniprot ID   A0A4P7LA10
Organism   Cupriavidus oxalaticus strain X32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139956..1152394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0W60_RS16110 (E0W60_16110) - 1140774..1141880 (-) 1107 WP_135704940.1 hypothetical protein -
  E0W60_RS16115 (E0W60_16115) - 1142027..1143277 (+) 1251 WP_135704941.1 lipoprotein-releasing ABC transporter permease subunit -
  E0W60_RS16120 (E0W60_16120) lolD 1143270..1144010 (+) 741 WP_133097574.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  E0W60_RS16125 (E0W60_16125) - 1144033..1144884 (+) 852 WP_135704942.1 TatD family hydrolase -
  E0W60_RS16130 (E0W60_16130) comA 1144956..1147394 (+) 2439 WP_135704943.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E0W60_RS16135 (E0W60_16135) - 1147407..1148723 (-) 1317 WP_135704128.1 IS4 family transposase -
  E0W60_RS16140 (E0W60_16140) - 1148812..1149762 (-) 951 WP_135704944.1 SIS domain-containing protein -
  E0W60_RS16145 (E0W60_16145) edd 1150018..1151913 (+) 1896 WP_135704945.1 phosphogluconate dehydratase -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 86335.46 Da        Isoelectric Point: 10.7946

>NTDB_id=355233 E0W60_RS16130 WP_135704943.1 1144956..1147394(+) (comA) [Cupriavidus oxalaticus strain X32]
MRVFVVAFVAGCWLLQQQATLPRQDVVRVAAAGLVLAAIAMLLRGRRLRAAWRGLVLAAVAAVAVGAAFCWAAWRADMRL
REWLPASLESRDLDVQGVVSGLPSESAGGVRFAFTVGKTVPDGADEPGLTLPGRLLLHWRDAPPDLYPGQRYTLTIRLRR
PRGLANPFGFDYAYWLLAQGYGATGYVRRAHGPPQEATRERLAWRIEAWRAAVRDHLRAALPDDARYGPVLVALVIGDQR
GIDTEDWQLFRRTGISHLVSISGLHITMIAGMAGSFAGMLWRHSFGLGRRLRRPLPLWLPARHAALVTAVAGAVTYGLLA
GMQVPALRTVAMLCVAALAVWSGRAPPASVVLACAALAALLLDPWAVMSPGFWLSFGAVAVIFYAARSGHGAPETRWQRM
RATLAAAARTQWAVTAGLVPLTLLLFQQVSVVSPLANAIAIPVVSLLVTPLSLAAAAAPAMLATPLLAVAHQAMVWLAAL
LGWLSGLPWAMWEAPASGPLPLLLALLGIALLLAPPASAAARLHGGLLVLPLVLARGPPVAHGEFRAVMLDVGQGTAVLV
QTRTHALLYDTGPGYASGSSAGAQVVVPVLRGLGLGRLDQLMVSHEDADHAGGVADVAAAVAVAARSTGAPPHHALLGPP
ASGWAPCADGQQWDWDGVRFTVLHPLPLQSQQAAIASNARSCVLSVATARHRLLLTGDIGVAEERALIDRLPPEALHADV
MVVAHHGSGTSSGAAWLDAVRPRAAVFQLGYANRYRHPRADVWERYGRAGIARYRTDETGAVTMATAPAGYTLSVFRQAE
PRYWRTRPDAPR

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=355233 E0W60_RS16130 WP_135704943.1 1144956..1147394(+) (comA) [Cupriavidus oxalaticus strain X32]
GTGCGCGTGTTCGTGGTGGCGTTCGTCGCGGGATGCTGGCTGCTGCAGCAGCAGGCAACGCTGCCGCGGCAGGACGTCGT
GCGCGTGGCCGCTGCCGGTCTGGTGCTGGCGGCCATCGCGATGCTGCTGCGTGGCAGGCGCCTGCGTGCCGCATGGCGGG
GACTGGTGCTGGCCGCCGTGGCCGCGGTGGCCGTTGGTGCCGCGTTCTGCTGGGCGGCATGGCGCGCCGATATGCGCTTG
CGGGAGTGGTTGCCCGCATCGCTCGAATCGCGCGATCTCGACGTGCAGGGTGTGGTTTCCGGATTGCCGTCCGAATCAGC
GGGCGGCGTCCGCTTTGCCTTCACCGTCGGGAAGACCGTGCCGGATGGGGCGGACGAACCAGGATTGACGTTGCCCGGCC
GGCTGCTTCTCCACTGGCGCGACGCGCCGCCTGACCTGTACCCCGGCCAGCGCTATACCCTGACCATACGCCTGCGGCGC
CCGCGCGGACTGGCCAATCCCTTCGGCTTCGACTATGCCTATTGGCTGCTGGCGCAGGGCTATGGCGCGACGGGCTACGT
ACGACGCGCGCATGGTCCGCCGCAGGAGGCAACGCGGGAACGGCTCGCATGGCGCATCGAAGCGTGGCGCGCGGCAGTGC
GCGATCACCTGCGCGCGGCGCTGCCGGATGATGCGCGCTATGGCCCGGTGCTGGTCGCGCTGGTGATCGGCGACCAGCGC
GGCATCGATACGGAAGACTGGCAGTTGTTCCGGCGTACCGGCATCAGCCACCTTGTCAGCATTTCAGGCCTGCACATCAC
CATGATCGCTGGCATGGCGGGGTCGTTCGCCGGCATGCTGTGGCGGCATTCGTTCGGGCTGGGGCGCCGGCTGCGCCGGC
CGCTGCCCCTGTGGCTGCCGGCCAGGCACGCGGCCCTGGTGACGGCGGTAGCCGGTGCGGTGACATACGGGCTGCTGGCC
GGGATGCAGGTGCCCGCGTTGCGCACGGTGGCGATGCTATGCGTGGCCGCACTGGCGGTGTGGAGTGGGCGGGCACCGCC
GGCGTCGGTGGTGCTGGCTTGTGCGGCACTGGCGGCGTTGCTGCTGGATCCGTGGGCGGTGATGTCGCCGGGCTTCTGGC
TGTCTTTCGGCGCGGTGGCGGTGATCTTCTACGCTGCCCGGTCCGGGCATGGCGCGCCGGAAACTCGCTGGCAACGCATG
CGTGCCACGCTTGCCGCCGCGGCGCGCACGCAATGGGCGGTCACAGCCGGGCTGGTGCCGCTGACGCTGTTGCTGTTCCA
GCAGGTGTCGGTGGTGTCGCCGCTCGCCAATGCTATCGCGATCCCGGTGGTCAGCCTGCTGGTGACGCCACTGTCGCTGG
CTGCCGCCGCCGCGCCGGCCATGCTGGCCACGCCGTTGCTGGCCGTCGCGCACCAGGCCATGGTATGGCTGGCCGCCTTG
CTGGGTTGGCTTTCCGGCCTGCCGTGGGCCATGTGGGAGGCGCCGGCATCGGGGCCGTTGCCGCTGCTGCTCGCCCTGCT
CGGGATCGCGCTGTTGCTGGCGCCGCCTGCCAGTGCCGCGGCGCGCCTGCATGGCGGCCTGCTGGTGTTGCCGCTCGTAT
TGGCGCGCGGCCCGCCGGTGGCGCATGGCGAGTTCCGTGCGGTGATGCTCGACGTGGGGCAGGGGACCGCGGTGCTGGTG
CAGACGCGTACGCATGCGCTGCTGTACGACACGGGCCCTGGCTATGCATCGGGCTCCAGTGCGGGCGCGCAAGTGGTGGT
GCCGGTGCTGCGCGGCCTGGGTCTCGGCCGGCTCGACCAGCTGATGGTCAGCCATGAAGACGCGGATCATGCCGGTGGTG
TGGCTGACGTGGCGGCGGCGGTGGCCGTAGCGGCGCGCAGTACCGGCGCGCCGCCGCACCATGCCTTGCTCGGGCCGCCA
GCATCCGGCTGGGCGCCGTGCGCGGACGGCCAGCAATGGGACTGGGACGGCGTGCGTTTCACGGTGCTGCATCCGTTGCC
ATTGCAGTCGCAACAGGCGGCGATCGCCAGCAACGCCCGTAGCTGTGTGCTGAGCGTGGCGACCGCGCGGCATCGCCTGT
TGCTGACCGGCGATATCGGCGTGGCCGAAGAACGCGCGCTGATCGACAGGCTGCCGCCCGAAGCGCTGCATGCCGACGTG
ATGGTGGTGGCGCACCACGGCAGCGGCACCTCTTCCGGTGCAGCGTGGCTGGACGCGGTGCGGCCCCGGGCGGCGGTATT
CCAGCTTGGCTATGCCAACCGCTACCGCCACCCCCGCGCCGACGTGTGGGAGCGCTATGGACGCGCCGGCATCGCGCGCT
ACCGCACTGACGAAACCGGCGCGGTGACCATGGCCACCGCGCCGGCGGGCTATACGCTGTCGGTGTTCCGGCAGGCTGAG
CCGCGCTATTGGCGCACCAGGCCGGATGCGCCGCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(234-514)

Domain of unknown function (DUF4131) (DUF4131)

(30-190)

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-746)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7LA10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.934

100

0.49

Multiple sequence alignment