Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY19_RS05690 Genome accession   NZ_CP046763
Coordinates   1169043..1170248 (-) Length   401 a.a.
NCBI ID   WP_025526635.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164043..1175248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS05660 - 1164228..1164638 (+) 411 WP_015297469.1 flagellar basal body-associated protein FliL -
  GPY19_RS05665 glpG 1164698..1165540 (-) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  GPY19_RS05670 glpE 1165540..1165860 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY19_RS05675 rpoH 1166352..1167212 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY19_RS05680 ftsX 1167388..1168356 (-) 969 WP_005481956.1 permease-like cell division protein FtsX -
  GPY19_RS05685 ftsE 1168346..1169020 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY19_RS05690 pilA 1169043..1170248 (-) 1206 WP_025526635.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY19_RS05695 rsmD 1170472..1171071 (+) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY19_RS05700 - 1171097..1171363 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY19_RS05705 - 1171416..1172000 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  GPY19_RS05710 - 1172120..1172341 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  GPY19_RS05715 - 1172411..1173031 (-) 621 WP_005481960.1 lysoplasmalogenase -
  GPY19_RS05725 - 1173765..1173944 (+) 180 WP_005458791.1 hypothetical protein -
  GPY19_RS05730 - 1174008..1174376 (-) 369 WP_005489749.1 hypothetical protein -
  GPY19_RS05735 - 1174618..1174947 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43754.36 Da        Isoelectric Point: 4.3201

>NTDB_id=355194 GPY19_RS05690 WP_025526635.1 1169043..1170248(-) (pilA) [Vibrio parahaemolyticus strain 2012AW-0353]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEEP
QVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKAS
RGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAA
VEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIM
LTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDALFSRE
E

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=355194 GPY19_RS05690 WP_025526635.1 1169043..1170248(-) (pilA) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGAGCCA
CAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAGCCTAAG
CCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGC
TAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCT
CGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACA
GCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCA
TCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCGGCTGCA
GTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGT
TATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTGCAAAACA
AAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATG
CTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGAT
TACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATTCGCT
ACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAA
GAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-178)

SRP54-type protein, GTPase domain (SRP54)

(198-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.272

91.771

0.461