Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY19_RS01445 Genome accession   NZ_CP046763
Coordinates   306422..307021 (-) Length   199 a.a.
NCBI ID   WP_025553812.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 301422..312021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS01420 - 301527..302186 (-) 660 WP_005397228.1 PAS domain-containing protein -
  GPY19_RS01425 - 302215..303492 (-) 1278 WP_005479508.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY19_RS01430 - 303508..303888 (-) 381 WP_154119831.1 RidA family protein -
  GPY19_RS01435 - 304206..305465 (+) 1260 WP_195723296.1 amino acid permease -
  GPY19_RS01440 aqpZ 305672..306370 (+) 699 WP_005460095.1 aquaporin Z -
  GPY19_RS01445 recR 306422..307021 (-) 600 WP_025553812.1 recombination mediator RecR Machinery gene
  GPY19_RS01450 - 307052..307381 (-) 330 WP_154119838.1 YbaB/EbfC family nucleoid-associated protein -
  GPY19_RS01455 dnaX 307464..309599 (-) 2136 WP_154119840.1 DNA polymerase III subunit gamma/tau -
  GPY19_RS01460 apt 309608..310153 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY19_RS01465 - 310319..310666 (-) 348 WP_240496030.1 YbaN family protein -
  GPY19_RS25175 - 310739..310870 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.70 Da        Isoelectric Point: 5.7468

>NTDB_id=355164 GPY19_RS01445 WP_025553812.1 306422..307021(-) (recR) [Vibrio parahaemolyticus strain 2012AW-0353]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355164 GPY19_RS01445 WP_025553812.1 306422..307021(-) (recR) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAAGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437

Multiple sequence alignment