Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY27_RS15960 Genome accession   NZ_CP046761
Coordinates   3207117..3208316 (+) Length   399 a.a.
NCBI ID   WP_158114073.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202117..3213316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS15915 - 3202409..3202738 (-) 330 WP_023583986.1 DUF2500 domain-containing protein -
  GPY27_RS15920 - 3202980..3203348 (+) 369 WP_005489749.1 hypothetical protein -
  GPY27_RS15925 - 3203412..3203591 (-) 180 WP_158114071.1 hypothetical protein -
  GPY27_RS15935 - 3204326..3204946 (+) 621 WP_005481960.1 lysoplasmalogenase -
  GPY27_RS15940 - 3205016..3205237 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  GPY27_RS15945 - 3205364..3205948 (+) 585 WP_140095537.1 YhgN family NAAT transporter -
  GPY27_RS15950 - 3206002..3206268 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY27_RS15955 rsmD 3206294..3206893 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY27_RS15960 pilA 3207117..3208316 (+) 1200 WP_158114073.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY27_RS15965 ftsE 3208339..3209013 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY27_RS15970 ftsX 3209003..3209971 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  GPY27_RS15975 rpoH 3210147..3211007 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY27_RS15980 glpE 3211499..3211819 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY27_RS15985 glpG 3211819..3212661 (+) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  GPY27_RS15990 - 3212721..3213131 (-) 411 WP_015297469.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 43570.20 Da        Isoelectric Point: 4.3371

>NTDB_id=355154 GPY27_RS15960 WP_158114073.1 3207117..3208316(+) (pilA) [Vibrio parahaemolyticus strain AM46865]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEELQV
PVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKASRG
DLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVE
QLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLT
LDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=355154 GPY27_RS15960 WP_158114073.1 3207117..3208316(+) (pilA) [Vibrio parahaemolyticus strain AM46865]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAGA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCAGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGAGCTACAAGTA
CCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAGCCTTAGCCGTAC
AAAAGCAAACATCGGTGCTGGTTTCTTTGGCCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAG
AGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGTGGT
GATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCT
AGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTA
AACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTAATGTTAGCGGCAGGCGATACTTTCCGAGCGGCAGCGGTTGAG
CAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTA
CGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCA
ACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACG
CTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATT
GACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATTCGCTACATTG
GTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(196-395)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.73

92.732

0.461