Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAMTA208_RS08350 Genome accession   NC_017188
Coordinates   1703148..1703579 (-) Length   143 a.a.
NCBI ID   WP_013352323.1    Uniprot ID   A0A9P1JH41
Organism   Bacillus amyloliquefaciens TA208     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698148..1708579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS08340 (BAMTA208_08620) hexA 1699648..1702233 (-) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene
  BAMTA208_RS08345 (BAMTA208_08625) cotE 1702349..1702894 (-) 546 WP_013352324.1 outer spore coat protein CotE -
  BAMTA208_RS08350 (BAMTA208_08630) ymcA 1703148..1703579 (-) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMTA208_RS08355 (BAMTA208_08635) miaB 1703582..1705111 (-) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAMTA208_RS08360 (BAMTA208_08640) - 1705254..1706429 (-) 1176 WP_014470387.1 glycine C-acetyltransferase -
  BAMTA208_RS08365 (BAMTA208_08645) tdh 1706445..1707491 (-) 1047 WP_014470388.1 L-threonine 3-dehydrogenase -
  BAMTA208_RS08370 (BAMTA208_08650) spoVS 1707748..1708008 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16128.29 Da        Isoelectric Point: 5.0213

>NTDB_id=35515 BAMTA208_RS08350 WP_013352323.1 1703148..1703579(-) (ymcA) [Bacillus amyloliquefaciens TA208]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEAIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=35515 BAMTA208_RS08350 WP_013352323.1 1703148..1703579(-) (ymcA) [Bacillus amyloliquefaciens TA208]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGCGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
CACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923

Multiple sequence alignment