Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY27_RS14345 Genome accession   NZ_CP046761
Coordinates   2892036..2892893 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887036..2897893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS14320 pyrE 2888007..2888648 (-) 642 WP_140154830.1 orotate phosphoribosyltransferase -
  GPY27_RS14325 rph 2888753..2889469 (-) 717 WP_140094381.1 ribonuclease PH -
  GPY27_RS14330 - 2889684..2890550 (+) 867 WP_029797860.1 YicC/YloC family endoribonuclease -
  GPY27_RS14335 - 2890605..2891030 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY27_RS14340 - 2891160..2891999 (-) 840 WP_021822504.1 ABC transporter ATP-binding protein -
  GPY27_RS14345 amiE 2892036..2892893 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY27_RS14350 - 2892903..2894729 (-) 1827 WP_021453260.1 extracellular solute-binding protein -
  GPY27_RS14355 - 2894768..2895811 (-) 1044 WP_005459031.1 ABC transporter permease subunit -
  GPY27_RS14360 - 2895813..2896838 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355141 GPY27_RS14345 WP_005496771.1 2892036..2892893(-) (amiE) [Vibrio parahaemolyticus strain AM46865]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355141 GPY27_RS14345 WP_005496771.1 2892036..2892893(-) (amiE) [Vibrio parahaemolyticus strain AM46865]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361

Multiple sequence alignment