Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   EIP71_RS05385 Genome accession   NZ_CP038604
Coordinates   1131457..1132062 (+) Length   201 a.a.
NCBI ID   WP_001648785.1    Uniprot ID   A0A3V9FJ62
Organism   Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1126457..1137062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP71_RS05365 (EIP71_05365) - 1126852..1128612 (-) 1761 WP_023205590.1 Lon protease family protein -
  EIP71_RS05370 (EIP71_05370) matP 1128798..1129250 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EIP71_RS05375 (EIP71_05375) ompA 1129322..1130374 (-) 1053 WP_001670727.1 porin OmpA -
  EIP71_RS05380 (EIP71_05380) sulA 1130731..1131240 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  EIP71_RS05385 (EIP71_05385) sxy/tfoX 1131457..1132062 (+) 606 WP_001648785.1 TfoX/Sxy family DNA transformation protein Regulator
  EIP71_RS05390 (EIP71_05390) yccS 1132049..1134202 (-) 2154 WP_000950869.1 YccS family putative transporter -
  EIP71_RS05395 (EIP71_05395) - 1134221..1134667 (-) 447 WP_001261222.1 YccF domain-containing protein -
  EIP71_RS05400 (EIP71_05400) helD 1134791..1136845 (+) 2055 WP_023205591.1 DNA helicase IV -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23188.97 Da        Isoelectric Point: 8.7403

>NTDB_id=355122 EIP71_RS05385 WP_001648785.1 1131457..1132062(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKILYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=355122 EIP71_RS05385 WP_001648785.1 1131457..1132062(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAATTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A3V9FJ62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.382

99.005

0.756


Multiple sequence alignment