Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY27_RS08485 Genome accession   NZ_CP046761
Coordinates   1685216..1686196 (+) Length   326 a.a.
NCBI ID   WP_023584267.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680216..1691196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS08465 - 1680573..1682183 (+) 1611 WP_158113959.1 peptide ABC transporter substrate-binding protein -
  GPY27_RS08470 oppB 1682350..1683270 (+) 921 WP_017448601.1 oligopeptide ABC transporter permease OppB -
  GPY27_RS08475 - 1683280..1684212 (+) 933 WP_140094310.1 ABC transporter permease subunit -
  GPY27_RS08480 - 1684223..1685206 (+) 984 WP_053047478.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY27_RS08485 amiE 1685216..1686196 (+) 981 WP_023584267.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY27_RS08490 - 1686206..1688002 (+) 1797 WP_158113961.1 aminopeptidase P family protein -
  GPY27_RS08500 - 1688250..1690694 (-) 2445 WP_140094304.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36464.24 Da        Isoelectric Point: 8.1168

>NTDB_id=355111 GPY27_RS08485 WP_023584267.1 1685216..1686196(+) (amiE) [Vibrio parahaemolyticus strain AM46865]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIEMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=355111 GPY27_RS08485 WP_023584267.1 1685216..1686196(+) (amiE) [Vibrio parahaemolyticus strain AM46865]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGACCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAGTTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTAACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGAGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGTCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiF Streptococcus thermophilus LMG 18311

45.788

83.742

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMD-9

45.421

83.742

0.38
  oppD Streptococcus mutans UA159

38.339

96.012

0.368

Multiple sequence alignment