Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | GPY27_RS03910 | Genome accession | NZ_CP046761 |
| Coordinates | 788031..788630 (+) | Length | 199 a.a. |
| NCBI ID | WP_005460088.1 | Uniprot ID | Q87MQ4 |
| Organism | Vibrio parahaemolyticus strain AM46865 | ||
| Function | promote later steps in plasmid transformation (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 783031..793630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY27_RS25045 | - | 784183..784314 (+) | 132 | WP_005380608.1 | hypothetical protein | - |
| GPY27_RS03890 | - | 784330..784734 (+) | 405 | WP_005494429.1 | YbaN family protein | - |
| GPY27_RS03895 | apt | 784900..785445 (+) | 546 | WP_005460112.1 | adenine phosphoribosyltransferase | - |
| GPY27_RS03900 | dnaX | 785454..787589 (+) | 2136 | WP_140095356.1 | DNA polymerase III subunit gamma/tau | - |
| GPY27_RS03905 | - | 787672..788001 (+) | 330 | WP_005460082.1 | YbaB/EbfC family nucleoid-associated protein | - |
| GPY27_RS03910 | recR | 788031..788630 (+) | 600 | WP_005460088.1 | recombination mediator RecR | Machinery gene |
| GPY27_RS03915 | aqpZ | 788681..789379 (-) | 699 | WP_140095354.1 | aquaporin Z | - |
| GPY27_RS03920 | - | 789586..790845 (-) | 1260 | WP_005494432.1 | amino acid permease | - |
| GPY27_RS03925 | - | 791163..791543 (+) | 381 | WP_005479566.1 | RidA family protein | - |
| GPY27_RS03930 | - | 791559..792836 (+) | 1278 | WP_031856378.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| GPY27_RS03935 | - | 792865..793524 (+) | 660 | WP_005397228.1 | PAS domain-containing protein | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 21725.73 Da Isoelectric Point: 5.7468
>NTDB_id=355097 GPY27_RS03910 WP_005460088.1 788031..788630(+) (recR) [Vibrio parahaemolyticus strain AM46865]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI
Nucleotide
Download Length: 600 bp
>NTDB_id=355097 GPY27_RS03910 WP_005460088.1 788031..788630(+) (recR) [Vibrio parahaemolyticus strain AM46865]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.724 |
100 |
0.447 |
| recR | Bacillus subtilis subsp. subtilis str. 168 |
43.216 |
100 |
0.432 |