Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY31_RS24335 Genome accession   NZ_CP046760
Coordinates   3220065..3221300 (+) Length   411 a.a.
NCBI ID   WP_158111883.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3215065..3226300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS24290 - 3215365..3215694 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  GPY31_RS24295 - 3215936..3216304 (+) 369 WP_005489749.1 hypothetical protein -
  GPY31_RS24300 - 3216368..3216547 (-) 180 WP_005458791.1 hypothetical protein -
  GPY31_RS24310 - 3217282..3217902 (+) 621 WP_005481960.1 lysoplasmalogenase -
  GPY31_RS24315 - 3217972..3218193 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  GPY31_RS24320 - 3218313..3218897 (+) 585 WP_158111882.1 YhgN family NAAT transporter -
  GPY31_RS24325 - 3218950..3219216 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GPY31_RS24330 rsmD 3219242..3219841 (-) 600 WP_069545322.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GPY31_RS24335 pilA 3220065..3221300 (+) 1236 WP_158111883.1 signal recognition particle-docking protein FtsY Machinery gene
  GPY31_RS24340 ftsE 3221323..3221997 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GPY31_RS24345 ftsX 3221987..3222955 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  GPY31_RS24350 rpoH 3223131..3223991 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GPY31_RS24355 glpE 3224483..3224803 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GPY31_RS24360 glpG 3224803..3225645 (+) 843 WP_025510242.1 rhomboid family intramembrane serine protease GlpG -
  GPY31_RS24365 - 3225705..3226115 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44785.35 Da        Isoelectric Point: 4.2442

>NTDB_id=355067 GPY31_RS24335 WP_158111883.1 3220065..3221300(+) (pilA) [Vibrio parahaemolyticus strain AM51552]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAETEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTK
IINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVML
AAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKK
IDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQ
EFIDALFSREE

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=355067 GPY31_RS24335 WP_158111883.1 3220065..3221300(+) (pilA) [Vibrio parahaemolyticus strain AM51552]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAACAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAG
CTTTTTCGCTCGCCTTAAACGTAGCTTAAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGTTTGTTCAGCGGTA
AAAAAATCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAA
ATCATCAACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGA
AATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTG
GTGTGAATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTA
GCGGCTGGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGC
GCAGCATACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTA
TCGCCGATACGGCGGGTCGTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAA
ATTGATGATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACT
TTTCAGTGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTA
TCGCTGATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAA
GAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-407)

SRP54-type protein, helical bundle domain (SRP54_N)

(127-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.677

91.971

0.448

Multiple sequence alignment