Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY31_RS22670 Genome accession   NZ_CP046760
Coordinates   2894141..2894998 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889141..2899998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS22645 pyrE 2890112..2890753 (-) 642 WP_025793729.1 orotate phosphoribosyltransferase -
  GPY31_RS22650 rph 2890858..2891574 (-) 717 WP_005459025.1 ribonuclease PH -
  GPY31_RS22655 - 2891789..2892655 (+) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GPY31_RS22660 - 2892710..2893135 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY31_RS22665 - 2893265..2894104 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY31_RS22670 amiE 2894141..2894998 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY31_RS22675 - 2895008..2896834 (-) 1827 WP_029853916.1 extracellular solute-binding protein -
  GPY31_RS22680 - 2896873..2897916 (-) 1044 WP_005496756.1 ABC transporter permease subunit -
  GPY31_RS22685 - 2897918..2898943 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355055 GPY31_RS22670 WP_005496771.1 2894141..2894998(-) (amiE) [Vibrio parahaemolyticus strain AM51552]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355055 GPY31_RS22670 WP_005496771.1 2894141..2894998(-) (amiE) [Vibrio parahaemolyticus strain AM51552]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCTATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGTTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCTCTGGATGTAACGGTACAGGCGTCTATCCTTGAACTTATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361