Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BAMTA208_RS05460 Genome accession   NC_017188
Coordinates   1093418..1094908 (+) Length   496 a.a.
NCBI ID   WP_013352711.1    Uniprot ID   A0A9P1NI75
Organism   Bacillus amyloliquefaciens TA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088418..1099908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS05440 (BAMTA208_05420) serA 1089072..1090649 (-) 1578 WP_014470037.1 phosphoglycerate dehydrogenase -
  BAMTA208_RS05445 (BAMTA208_05425) - 1091138..1091710 (+) 573 WP_013352713.1 ECF transporter S component -
  BAMTA208_RS05450 (BAMTA208_05435) - 1091849..1092097 (-) 249 WP_003153403.1 ferredoxin -
  BAMTA208_RS05455 (BAMTA208_05440) - 1092367..1093425 (+) 1059 WP_013352712.1 helix-turn-helix domain-containing protein -
  BAMTA208_RS05460 (BAMTA208_05445) recS 1093418..1094908 (+) 1491 WP_013352711.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BAMTA208_RS05465 (BAMTA208_05450) - 1094923..1095510 (+) 588 WP_014470039.1 CPBP family intramembrane glutamic endopeptidase -
  BAMTA208_RS05470 (BAMTA208_05460) - 1095488..1096263 (+) 776 Protein_1061 LysM peptidoglycan-binding domain-containing protein -
  BAMTA208_RS05475 (BAMTA208_05465) - 1096327..1096785 (+) 459 WP_013352708.1 YpbF family protein -
  BAMTA208_RS05480 (BAMTA208_05470) - 1096872..1097660 (+) 789 WP_013352707.1 metallophosphoesterase -
  BAMTA208_RS05485 (BAMTA208_05475) - 1097812..1098396 (+) 585 WP_014470042.1 genetic competence negative regulator -
  BAMTA208_RS05490 (BAMTA208_05480) gudB 1098558..1099832 (+) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56030.05 Da        Isoelectric Point: 5.9413

>NTDB_id=35503 BAMTA208_RS05460 WP_013352711.1 1093418..1094908(+) (recS) [Bacillus amyloliquefaciens TA208]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFVLSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAIEHVADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTN
KEQLQEELTCRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPEGPTGQCCSSCGMDLTPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=35503 BAMTA208_RS05460 WP_013352711.1 1093418..1094908(+) (recS) [Bacillus amyloliquefaciens TA208]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTTTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTGTCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAATCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGATTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCATTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGCAGCCCAAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACAAGCGATGAGCGAAAGCTTC
GGGATGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCAAT
AAAGAGCAGCTGCAAGAAGAACTGACATGCCGCGTGGAAAAGAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAGGTCCAACCGGGCAATGCT
GCAGCAGCTGCGGAATGGATCTGACCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NI75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.556

100

0.696

Multiple sequence alignment