Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EQK04_RS14740 Genome accession   NZ_CP038517
Coordinates   2842893..2843534 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837893..2848534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS14705 (EQK04_14785) - 2839021..2839452 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  EQK04_RS14710 (EQK04_14790) - 2839452..2839793 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  EQK04_RS14715 (EQK04_14795) - 2839786..2841264 (+) 1479 WP_017367959.1 Na+/H+ antiporter subunit D -
  EQK04_RS14720 (EQK04_14800) - 2841271..2841750 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  EQK04_RS14725 (EQK04_14805) - 2841750..2842031 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  EQK04_RS14730 (EQK04_14810) mnhG 2842015..2842389 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  EQK04_RS14735 (EQK04_14815) - 2842480..2842869 (-) 390 WP_017367960.1 hotdog fold thioesterase -
  EQK04_RS14740 (EQK04_14820) comA 2842893..2843534 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  EQK04_RS14745 (EQK04_14825) comP 2843615..2845921 (-) 2307 WP_017367961.1 ATP-binding protein Regulator
  EQK04_RS14750 (EQK04_14830) comX 2845935..2846105 (-) 171 WP_008345861.1 competence pheromone ComX -
  EQK04_RS14755 (EQK04_14835) - 2846083..2847006 (-) 924 WP_017367962.1 polyprenyl synthetase family protein -
  EQK04_RS14760 (EQK04_14840) degQ 2847158..2847298 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  EQK04_RS14765 (EQK04_14845) - 2847804..2848157 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=355015 EQK04_RS14740 WP_007500477.1 2842893..2843534(-) (comA) [Bacillus altitudinis strain SCU11]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=355015 EQK04_RS14740 WP_007500477.1 2842893..2843534(-) (comA) [Bacillus altitudinis strain SCU11]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCTATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment