Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY31_RS12685 Genome accession   NZ_CP046760
Coordinates   828927..829526 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain AM51552     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 823927..834526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS24955 - 825073..825204 (+) 132 WP_005380608.1 hypothetical protein -
  GPY31_RS12665 - 825220..825624 (+) 405 WP_005494429.1 YbaN family protein -
  GPY31_RS12670 apt 825790..826335 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY31_RS12675 dnaX 826344..828485 (+) 2142 WP_042773050.1 DNA polymerase III subunit gamma/tau -
  GPY31_RS12680 - 828568..828897 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY31_RS12685 recR 828927..829526 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GPY31_RS12690 aqpZ 829577..830275 (-) 699 WP_005460095.1 aquaporin Z -
  GPY31_RS12695 - 830482..831741 (-) 1260 WP_021451163.1 aromatic amino acid transport family protein -
  GPY31_RS12700 - 832059..832439 (+) 381 WP_005479566.1 RidA family protein -
  GPY31_RS12705 - 832455..833732 (+) 1278 WP_031856378.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GPY31_RS12710 - 833761..834420 (+) 660 WP_005397228.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355010 GPY31_RS12685 WP_005460088.1 828927..829526(+) (recR) [Vibrio parahaemolyticus strain AM51552]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355010 GPY31_RS12685 WP_005460088.1 828927..829526(+) (recR) [Vibrio parahaemolyticus strain AM51552]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432