Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   BAMTA208_RS05050 Genome accession   NC_017188
Coordinates   1019071..1022463 (+) Length   1130 a.a.
NCBI ID   WP_014470011.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1014071..1027463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS05040 (BAMTA208_04980) addA 1014131..1017835 (+) 3705 WP_014470010.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BAMTA208_RS05045 (BAMTA208_04985) sbcD 1017902..1019074 (+) 1173 WP_013351762.1 exonuclease subunit SbcD -
  BAMTA208_RS05050 (BAMTA208_04990) sbcC 1019071..1022463 (+) 3393 WP_014470011.1 exonuclease subunit SbcC Machinery gene
  BAMTA208_RS05055 (BAMTA208_04995) - 1022479..1022778 (+) 300 WP_013351764.1 hypothetical protein -
  BAMTA208_RS05060 (BAMTA208_05000) - 1022819..1023037 (-) 219 WP_013351765.1 spore germination protein -
  BAMTA208_RS05065 (BAMTA208_05005) - 1023077..1023472 (-) 396 WP_014470012.1 spore germination protein GerPE -
  BAMTA208_RS05070 (BAMTA208_05010) - 1023472..1023648 (-) 177 WP_013351767.1 hypothetical protein -
  BAMTA208_RS05075 (BAMTA208_05015) - 1023645..1024265 (-) 621 WP_013351768.1 spore germination protein GerPC -
  BAMTA208_RS05080 (BAMTA208_05020) - 1024300..1024533 (-) 234 WP_014470013.1 spore germination protein GerPB -
  BAMTA208_RS05085 (BAMTA208_05030) - 1024546..1024767 (-) 222 WP_003155135.1 spore germination protein -
  BAMTA208_RS21525 - 1025064..1025177 (-) 114 Protein_982 aspartyl-phosphate phosphatase Spo0E family protein -
  BAMTA208_RS05095 (BAMTA208_05045) - 1025394..1026299 (+) 906 WP_013351771.1 fumarylacetoacetate hydrolase family protein -
  BAMTA208_RS05100 (BAMTA208_05050) - 1026394..1026750 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128320.45 Da        Isoelectric Point: 5.5159

>NTDB_id=35501 BAMTA208_RS05050 WP_014470011.1 1019071..1022463(+) (sbcC) [Bacillus amyloliquefaciens TA208]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAK
ERFENHQEIWNLQTERNEYEVRQEKLEEKRPYITDLTDRLKEAETALALEPYADRYTEAVRRKERAEKEHELAKRKLEAE
TASFTRQNEAYEAWRIHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTKAEHGKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKVVQVTADERKKCQTAAQLAAGFQQTQEQIKKERVNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQTDLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQNARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISTYQKTVKQAEQLGERIRYEEKEAERLKHSLEELESLSESRLNQYNEACGDIPLNRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWYGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDSSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAEAESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=35501 BAMTA208_RS05050 WP_014470011.1 1019071..1022463(+) (sbcC) [Bacillus amyloliquefaciens TA208]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAACCATGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCCTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTTTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGTCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCACTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCCGCGAAAAAAAATGAGATGCTGGCAGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCATGAAGCGAATGAACGGCTTGAAGCGGCTGAGAAGAAACGGGTCCAAGCAAAA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACTTGCAGACAGAGAGAAACGAATACGAGGTGCGGCAGGAAAAGCTTGA
GGAAAAACGCCCGTATATCACGGATTTGACTGACCGTCTTAAAGAAGCGGAAACTGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGAAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGATTCATAAGGCTGAACAAGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGGCTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAAAACAAAGG
CGGAGCACGGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGATCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGTAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCAAGAAAGAACGGGTCAATCTGACAGCCCAGTTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAACCGACCTGCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCTATCAGCGGCCGTCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAACAGCTGGGCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGAGCGCCTCAAACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCCGCTTGA
ATCAGTACAATGAAGCCTGCGGGGATATTCCGTTAAACCGGATTGACGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCCTTCCTAAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCAGTGCGGCAGGAATTACAGCTC
TTAAAATCGAAAGAACAGTCGTTATTCGATGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAATGACTGGTACGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACAGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGGCTGAGTCAGGCGCCGCCAAGGAGGAAAAAGGAGCTC
AGGCAAAAGCCTTTGCGGTGATGCAGAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCACGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTCGTCATGCGCGATGACGCGAACGGCGGCGTCAAACGCCCCGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCTGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.67

100

0.65

Multiple sequence alignment