Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQK04_RS09925 Genome accession   NZ_CP038517
Coordinates   1973958..1974593 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain SCU11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968958..1979593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS09885 (EQK04_09970) - 1969120..1970238 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  EQK04_RS09890 (EQK04_09975) - 1970290..1970796 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  EQK04_RS09895 (EQK04_09980) - 1970965..1971384 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  EQK04_RS09900 (EQK04_09985) - 1971406..1971858 (-) 453 WP_017359729.1 YppG family protein -
  EQK04_RS09905 (EQK04_09990) - 1971967..1972347 (-) 381 WP_225310452.1 YppE family protein -
  EQK04_RS09910 (EQK04_09995) - 1972397..1972630 (-) 234 WP_231131595.1 DUF5446 family protein -
  EQK04_RS09915 (EQK04_10000) sspM 1972827..1972931 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  EQK04_RS09920 (EQK04_10005) - 1972955..1973911 (-) 957 WP_017367486.1 DUF2515 domain-containing protein -
  EQK04_RS09925 (EQK04_10010) recU 1973958..1974593 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  EQK04_RS09930 (EQK04_10015) - 1974613..1977300 (+) 2688 WP_017367487.1 PBP1A family penicillin-binding protein -
  EQK04_RS09935 (EQK04_10020) - 1977336..1977845 (-) 510 WP_017367488.1 YpoC family protein -
  EQK04_RS09940 (EQK04_10025) nth 1977842..1978504 (-) 663 WP_008344602.1 endonuclease III -
  EQK04_RS09945 (EQK04_10030) - 1978522..1979226 (-) 705 WP_017367489.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=355000 EQK04_RS09925 WP_017359733.1 1973958..1974593(+) (recU) [Bacillus altitudinis strain SCU11]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=355000 EQK04_RS09925 WP_017359733.1 1973958..1974593(+) (recU) [Bacillus altitudinis strain SCU11]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment