Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EQK04_RS08520 Genome accession   NZ_CP038517
Coordinates   1695396..1695776 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1690396..1700776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS08510 (EQK04_08590) - 1692119..1693027 (+) 909 WP_008343827.1 trypsin-like serine peptidase -
  EQK04_RS08515 (EQK04_08595) - 1693174..1695168 (+) 1995 WP_017367322.1 glycosyltransferase family 39 protein -
  EQK04_RS08520 (EQK04_08600) nucA/comI 1695396..1695776 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  EQK04_RS08525 (EQK04_08605) - 1695920..1696768 (+) 849 WP_017367323.1 STAS domain-containing protein -
  EQK04_RS08530 (EQK04_08610) - 1696801..1697343 (-) 543 WP_017367324.1 IseA DL-endopeptidase inhibitor family protein -
  EQK04_RS08535 (EQK04_08615) - 1697640..1698083 (+) 444 WP_017367325.1 hypothetical protein -
  EQK04_RS08540 (EQK04_08620) lexA 1698131..1698751 (-) 621 WP_017367326.1 transcriptional repressor LexA -
  EQK04_RS08545 (EQK04_08625) yneA 1698911..1699222 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  EQK04_RS08550 (EQK04_08630) - 1699240..1699887 (+) 648 WP_017359583.1 recombinase family protein -
  EQK04_RS08555 (EQK04_08635) - 1699957..1700187 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=354999 EQK04_RS08520 WP_224559893.1 1695396..1695776(+) (nucA/comI) [Bacillus altitudinis strain SCU11]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=354999 EQK04_RS08520 WP_224559893.1 1695396..1695776(+) (nucA/comI) [Bacillus altitudinis strain SCU11]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCAGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment