Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EQK04_RS06595 Genome accession   NZ_CP038517
Coordinates   1307775..1308236 (-) Length   153 a.a.
NCBI ID   WP_173962595.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302775..1313236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS06570 (EQK04_06650) - 1303381..1304265 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  EQK04_RS06575 - 1304330..1304482 (-) 153 WP_017367142.1 hypothetical protein -
  EQK04_RS06580 (EQK04_06655) - 1304783..1305322 (+) 540 WP_007498690.1 RDD family protein -
  EQK04_RS06585 (EQK04_06660) - 1305448..1306758 (+) 1311 WP_026050080.1 MFS transporter -
  EQK04_RS06590 (EQK04_06665) - 1306832..1307740 (+) 909 WP_008348035.1 chemotaxis protein -
  EQK04_RS06595 (EQK04_06670) kre 1307775..1308236 (-) 462 WP_173962595.1 YkyB family protein Regulator
  EQK04_RS06600 (EQK04_06675) - 1308456..1309352 (-) 897 WP_017367144.1 helix-turn-helix domain-containing protein -
  EQK04_RS06605 (EQK04_06680) - 1309466..1310398 (+) 933 WP_017367145.1 DMT family transporter -
  EQK04_RS06610 (EQK04_06685) - 1310568..1310783 (-) 216 WP_008348016.1 hypothetical protein -
  EQK04_RS06615 - 1310951..1311127 (+) 177 WP_008348014.1 hypothetical protein -
  EQK04_RS06620 (EQK04_06695) - 1311355..1312632 (-) 1278 WP_017367146.1 MFS transporter -
  EQK04_RS06625 (EQK04_06700) - 1312706..1313203 (-) 498 WP_008348009.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17725.24 Da        Isoelectric Point: 10.1984

>NTDB_id=354992 EQK04_RS06595 WP_173962595.1 1307775..1308236(-) (kre) [Bacillus altitudinis strain SCU11]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKENPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=354992 EQK04_RS06595 WP_173962595.1 1307775..1308236(-) (kre) [Bacillus altitudinis strain SCU11]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCTAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAACCCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment