Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EQK04_RS05020 Genome accession   NZ_CP038517
Coordinates   1001717..1002667 (+) Length   316 a.a.
NCBI ID   WP_017366964.1    Uniprot ID   A0A9X0FWU4
Organism   Bacillus altitudinis strain SCU11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996717..1007667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS05000 (EQK04_05065) - 997953..998435 (+) 483 WP_017366960.1 hypothetical protein -
  EQK04_RS05005 (EQK04_05070) - 998466..999905 (-) 1440 WP_017366961.1 PLP-dependent aminotransferase family protein -
  EQK04_RS05010 (EQK04_05075) - 1000049..1001218 (+) 1170 WP_017366962.1 MFS transporter -
  EQK04_RS05015 (EQK04_05080) - 1001281..1001559 (+) 279 WP_017366963.1 barstar family protein -
  EQK04_RS05020 (EQK04_05085) ceuB 1001717..1002667 (+) 951 WP_017366964.1 ABC transporter permease Machinery gene
  EQK04_RS05025 (EQK04_05090) - 1002660..1003610 (+) 951 WP_017366965.1 iron chelate uptake ABC transporter family permease subunit -
  EQK04_RS05030 (EQK04_05095) - 1003601..1004359 (+) 759 WP_017366966.1 ABC transporter ATP-binding protein -
  EQK04_RS05035 (EQK04_05100) - 1004382..1005326 (+) 945 WP_017366967.1 siderophore ABC transporter substrate-binding protein -
  EQK04_RS05040 (EQK04_05105) - 1005465..1006421 (+) 957 WP_007499147.1 LCP family protein -
  EQK04_RS05045 (EQK04_05115) - 1006654..1007088 (-) 435 WP_017360225.1 hypothetical protein -
  EQK04_RS05050 (EQK04_05120) - 1007174..1007536 (-) 363 WP_008348633.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34945.28 Da        Isoelectric Point: 9.7475

>NTDB_id=354980 EQK04_RS05020 WP_017366964.1 1001717..1002667(+) (ceuB) [Bacillus altitudinis strain SCU11]
MKLYQLSLLFVCLACASLFVGVQDLSLLQLFHLSDEQMNTLFSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILTAMLVFTQASPLMKMAIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=354980 EQK04_RS05020 WP_017366964.1 1001717..1002667(+) (ceuB) [Bacillus altitudinis strain SCU11]
ATGAAGTTGTACCAATTAAGTTTGTTGTTTGTGTGTTTGGCATGTGCGTCGCTGTTTGTCGGAGTACAGGACCTGTCTCT
TTTACAGTTGTTTCATCTATCAGATGAACAAATGAACACCTTATTTTCAAGTCGCATCCCGCGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTGAGCTTATGCGGTTTTATCATGCAAAGCATGACGAGAAATAAATTTGTCTCTCCAACGACTGCA
GGAACAATGGATTGGGCCAAGCTGGGTATTTTAACCGCTATGCTTGTTTTTACACAGGCAAGCCCGCTGATGAAAATGGC
GATTGCGTTTTTATTTACGTTAGCTGGCAATCTATTATTCTTAAAAATTCTACGCCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGAATTGTTAGTTCAATTTCCACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTGCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
TCTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGGATGGGTGAGAGCTTTGCCGTCAATTTAGGTT
TAACGTATAAACGTGTCATGGCAGTTGGTTTGGTGATTGTTTCGATGATTACTTCTGTAACGATTTTGACTGTTGGCATG
CTACCTTTCCTCGGCTTAATCATTCCGAATATTGTATCGATCTACCGAGGGGATCACTTGAAAAAGAGCCTTCCGCATAC
GGCTTTATTAGGGGCCATTTTTGTGCTCATATGTGACGTGCTCGGACGAGTGATCATTTATCCATATGAAATATCTGTCG
GGCTTATGGTCGGCATCATTGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAGCGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52

94.937

0.494

Multiple sequence alignment